miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26838 3' -50.2 NC_005809.1 + 33150 1.12 0.00151
Target:  5'- aACGACGCUAUUCAAGACCUGCAAGCCc -3'
miRNA:   3'- -UGCUGCGAUAAGUUCUGGACGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 1460 0.78 0.291214
Target:  5'- gACGGCGCgg-UCGGcGGCCUccugGCAGGCCg -3'
miRNA:   3'- -UGCUGCGauaAGUU-CUGGA----CGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 26746 0.77 0.322647
Target:  5'- gACGGCG-UGUUCGAGuCCUGCGcggugguGGCCg -3'
miRNA:   3'- -UGCUGCgAUAAGUUCuGGACGU-------UCGG- -5'
26838 3' -50.2 NC_005809.1 + 30540 0.76 0.358349
Target:  5'- gAC-ACGCUGggCAAGACCUcGCcGGCCa -3'
miRNA:   3'- -UGcUGCGAUaaGUUCUGGA-CGuUCGG- -5'
26838 3' -50.2 NC_005809.1 + 35780 0.74 0.435598
Target:  5'- aGCGAUGCgcaagUCAAGGCgCUGaacCAGGCCa -3'
miRNA:   3'- -UGCUGCGaua--AGUUCUG-GAC---GUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 34612 0.74 0.445915
Target:  5'- cACGAUGCgcgcCGAGGCCacggGCAAGCUg -3'
miRNA:   3'- -UGCUGCGauaaGUUCUGGa---CGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 35221 0.74 0.477656
Target:  5'- aACGACGCcgaggUCGAGGCC-GCGcucaaGGCCa -3'
miRNA:   3'- -UGCUGCGaua--AGUUCUGGaCGU-----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 37304 0.74 0.481973
Target:  5'- uCGACGCUGgaaCGAcgcauugccgaccccGACCUGCcGGCCg -3'
miRNA:   3'- uGCUGCGAUaa-GUU---------------CUGGACGuUCGG- -5'
26838 3' -50.2 NC_005809.1 + 41443 0.73 0.499424
Target:  5'- aACGGCcGCUGcUCAuGAUCgacgGCAAGCCu -3'
miRNA:   3'- -UGCUG-CGAUaAGUuCUGGa---CGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 15115 0.73 0.532863
Target:  5'- cGCGGCGCgcuggCAuaccagcgccaGGGCCUGC-GGCCg -3'
miRNA:   3'- -UGCUGCGauaa-GU-----------UCUGGACGuUCGG- -5'
26838 3' -50.2 NC_005809.1 + 38059 0.72 0.544191
Target:  5'- uGCGAUGCgc-UCAAGcGCCUGUGGcGCCg -3'
miRNA:   3'- -UGCUGCGauaAGUUC-UGGACGUU-CGG- -5'
26838 3' -50.2 NC_005809.1 + 8452 0.72 0.555597
Target:  5'- cGCGAUGUcggcgUCGAGgugGCCUGCGAuGCCg -3'
miRNA:   3'- -UGCUGCGaua--AGUUC---UGGACGUU-CGG- -5'
26838 3' -50.2 NC_005809.1 + 11514 0.72 0.590187
Target:  5'- aGCGccuGCGCUGgcgUGAGGcCCUGCGAGCg -3'
miRNA:   3'- -UGC---UGCGAUaa-GUUCU-GGACGUUCGg -5'
26838 3' -50.2 NC_005809.1 + 35299 0.71 0.621629
Target:  5'- uACGGCcccgaggccaagcaGCaGUUCAAGACCUGgGcGGCCg -3'
miRNA:   3'- -UGCUG--------------CGaUAAGUUCUGGACgU-UCGG- -5'
26838 3' -50.2 NC_005809.1 + 25799 0.71 0.625132
Target:  5'- cGCGGCGCgcucgGUaUCGuuGAUCUGCAccgGGCCg -3'
miRNA:   3'- -UGCUGCGa----UA-AGUu-CUGGACGU---UCGG- -5'
26838 3' -50.2 NC_005809.1 + 35516 0.71 0.636809
Target:  5'- aACGACGCUGccgccCGAGGCCaUGCGccuGCUg -3'
miRNA:   3'- -UGCUGCGAUaa---GUUCUGG-ACGUu--CGG- -5'
26838 3' -50.2 NC_005809.1 + 2051 0.71 0.636809
Target:  5'- gGCGACGauggAUUCAAgGGCCUGU-AGCUu -3'
miRNA:   3'- -UGCUGCga--UAAGUU-CUGGACGuUCGG- -5'
26838 3' -50.2 NC_005809.1 + 9617 0.71 0.648481
Target:  5'- uCGACGU---UCAGGGCCUuCAAGUCg -3'
miRNA:   3'- uGCUGCGauaAGUUCUGGAcGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 39913 0.7 0.671763
Target:  5'- uCGAUGCgaccgCAAGACCUcgcacgGCAAGCg -3'
miRNA:   3'- uGCUGCGauaa-GUUCUGGA------CGUUCGg -5'
26838 3' -50.2 NC_005809.1 + 31859 0.7 0.683347
Target:  5'- gACGACGC-AUUCAagcaaucggccgAGGCCgUGCGcgcuGCCg -3'
miRNA:   3'- -UGCUGCGaUAAGU------------UCUGG-ACGUu---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.