miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26838 3' -50.2 NC_005809.1 + 6224 0.67 0.842961
Target:  5'- uGCGuuuUGCcuucggcCAGGGCCUGCAcGCCg -3'
miRNA:   3'- -UGCu--GCGauaa---GUUCUGGACGUuCGG- -5'
26838 3' -50.2 NC_005809.1 + 9537 0.69 0.727876
Target:  5'- uGCGGCcCUGUUCGGccagugcGAUCUGCucGCCg -3'
miRNA:   3'- -UGCUGcGAUAAGUU-------CUGGACGuuCGG- -5'
26838 3' -50.2 NC_005809.1 + 40904 0.69 0.727876
Target:  5'- cGCGaguccaaGCGCagGUgCAAGACCUGCuacuggAAGCCa -3'
miRNA:   3'- -UGC-------UGCGa-UAaGUUCUGGACG------UUCGG- -5'
26838 3' -50.2 NC_005809.1 + 32592 0.69 0.729
Target:  5'- cCGACGCUGUgacCAAGcugGCCcGCGucaagGGCCg -3'
miRNA:   3'- uGCUGCGAUAa--GUUC---UGGaCGU-----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 37561 0.68 0.772909
Target:  5'- cGCGGCGCUGaaagCGGacugcgccGACCUGCuguucGCCa -3'
miRNA:   3'- -UGCUGCGAUaa--GUU--------CUGGACGuu---CGG- -5'
26838 3' -50.2 NC_005809.1 + 18251 0.68 0.803156
Target:  5'- -gGAUGCcggUCAcGACCUGCGccgagaacuugccGGCCg -3'
miRNA:   3'- ugCUGCGauaAGUuCUGGACGU-------------UCGG- -5'
26838 3' -50.2 NC_005809.1 + 25323 0.68 0.814203
Target:  5'- cCGGCGCUcgUCGccgGGAUUgucCAGGCCg -3'
miRNA:   3'- uGCUGCGAuaAGU---UCUGGac-GUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 11273 0.67 0.82402
Target:  5'- uGCGGCGCUGggacgCucGGCCagGUAGGCg -3'
miRNA:   3'- -UGCUGCGAUaa---GuuCUGGa-CGUUCGg -5'
26838 3' -50.2 NC_005809.1 + 21387 0.67 0.82402
Target:  5'- aAUGGCGCg---CuGGGCCUGCGcgAGCa -3'
miRNA:   3'- -UGCUGCGauaaGuUCUGGACGU--UCGg -5'
26838 3' -50.2 NC_005809.1 + 12682 0.69 0.717716
Target:  5'- -aGGCGCgugUCGAGGCCcGCcuugauAGCCu -3'
miRNA:   3'- ugCUGCGauaAGUUCUGGaCGu-----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 31008 0.7 0.694876
Target:  5'- cGCGAC-CUGUcCAcGGGCUUGCcGGCCg -3'
miRNA:   3'- -UGCUGcGAUAaGU-UCUGGACGuUCGG- -5'
26838 3' -50.2 NC_005809.1 + 9617 0.71 0.648481
Target:  5'- uCGACGU---UCAGGGCCUuCAAGUCg -3'
miRNA:   3'- uGCUGCGauaAGUUCUGGAcGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 35780 0.74 0.435598
Target:  5'- aGCGAUGCgcaagUCAAGGCgCUGaacCAGGCCa -3'
miRNA:   3'- -UGCUGCGaua--AGUUCUG-GAC---GUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 35221 0.74 0.477656
Target:  5'- aACGACGCcgaggUCGAGGCC-GCGcucaaGGCCa -3'
miRNA:   3'- -UGCUGCGaua--AGUUCUGGaCGU-----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 37304 0.74 0.481973
Target:  5'- uCGACGCUGgaaCGAcgcauugccgaccccGACCUGCcGGCCg -3'
miRNA:   3'- uGCUGCGAUaa-GUU---------------CUGGACGuUCGG- -5'
26838 3' -50.2 NC_005809.1 + 41443 0.73 0.499424
Target:  5'- aACGGCcGCUGcUCAuGAUCgacgGCAAGCCu -3'
miRNA:   3'- -UGCUG-CGAUaAGUuCUGGa---CGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 38059 0.72 0.544191
Target:  5'- uGCGAUGCgc-UCAAGcGCCUGUGGcGCCg -3'
miRNA:   3'- -UGCUGCGauaAGUUC-UGGACGUU-CGG- -5'
26838 3' -50.2 NC_005809.1 + 11514 0.72 0.590187
Target:  5'- aGCGccuGCGCUGgcgUGAGGcCCUGCGAGCg -3'
miRNA:   3'- -UGC---UGCGAUaa-GUUCU-GGACGUUCGg -5'
26838 3' -50.2 NC_005809.1 + 25799 0.71 0.625132
Target:  5'- cGCGGCGCgcucgGUaUCGuuGAUCUGCAccgGGCCg -3'
miRNA:   3'- -UGCUGCGa----UA-AGUu-CUGGACGU---UCGG- -5'
26838 3' -50.2 NC_005809.1 + 35516 0.71 0.636809
Target:  5'- aACGACGCUGccgccCGAGGCCaUGCGccuGCUg -3'
miRNA:   3'- -UGCUGCGAUaa---GUUCUGG-ACGUu--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.