miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26838 5' -52.6 NC_005809.1 + 35881 0.66 0.763716
Target:  5'- -gGACAaGguGUGcCUGCACGAUGgCGa -3'
miRNA:   3'- cgCUGUaCguCACcGACGUGUUAC-GU- -5'
26838 5' -52.6 NC_005809.1 + 14684 0.66 0.719595
Target:  5'- cGCGACGUGCuG-GGCgaGCACGccaagaugGCGa -3'
miRNA:   3'- -CGCUGUACGuCaCCGa-CGUGUua------CGU- -5'
26838 5' -52.6 NC_005809.1 + 27135 0.66 0.719595
Target:  5'- cGCGucaagaacaucaACAaGCuGUGGUUGCGC-GUGCAu -3'
miRNA:   3'- -CGC------------UGUaCGuCACCGACGUGuUACGU- -5'
26838 5' -52.6 NC_005809.1 + 2233 0.67 0.70829
Target:  5'- cGCGcaGCAggcgGCGcGUGGCcGCGCAAUGa- -3'
miRNA:   3'- -CGC--UGUa---CGU-CACCGaCGUGUUACgu -5'
26838 5' -52.6 NC_005809.1 + 39023 0.67 0.70829
Target:  5'- uGCGGC--GCGGuUGGCgggacUGCGCGGUGUg -3'
miRNA:   3'- -CGCUGuaCGUC-ACCG-----ACGUGUUACGu -5'
26838 5' -52.6 NC_005809.1 + 15102 0.67 0.685442
Target:  5'- cGCGugGUGC-GUGcGCgGCGCGcugGCAu -3'
miRNA:   3'- -CGCugUACGuCAC-CGaCGUGUua-CGU- -5'
26838 5' -52.6 NC_005809.1 + 38194 0.67 0.662368
Target:  5'- cGCGACG-GCGccUGGCUGCGCAuccGCc -3'
miRNA:   3'- -CGCUGUaCGUc-ACCGACGUGUua-CGu -5'
26838 5' -52.6 NC_005809.1 + 25597 0.68 0.650777
Target:  5'- uGCGGCccagGCAGUGGCaaccacggcgGCGCGGUcGCc -3'
miRNA:   3'- -CGCUGua--CGUCACCGa---------CGUGUUA-CGu -5'
26838 5' -52.6 NC_005809.1 + 26139 0.68 0.650777
Target:  5'- cGCGGCAgauuuggcGCAGcGGCUcGCcgucuGCGAUGCGg -3'
miRNA:   3'- -CGCUGUa-------CGUCaCCGA-CG-----UGUUACGU- -5'
26838 5' -52.6 NC_005809.1 + 33904 0.68 0.639168
Target:  5'- gGCGGCGcaGCAGccGCUGCACAcaGCGa -3'
miRNA:   3'- -CGCUGUa-CGUCacCGACGUGUuaCGU- -5'
26838 5' -52.6 NC_005809.1 + 16647 0.68 0.627551
Target:  5'- gGCGACAUGCuG-GGCcacCGCAAgcUGCAa -3'
miRNA:   3'- -CGCUGUACGuCaCCGac-GUGUU--ACGU- -5'
26838 5' -52.6 NC_005809.1 + 21189 0.68 0.615938
Target:  5'- cGCGGCcUGCuGcUGGuCUGCGCGuUGCu -3'
miRNA:   3'- -CGCUGuACGuC-ACC-GACGUGUuACGu -5'
26838 5' -52.6 NC_005809.1 + 7123 0.68 0.604342
Target:  5'- uGCGugAUGCccAGcGGUUGCAUAAggGCGc -3'
miRNA:   3'- -CGCugUACG--UCaCCGACGUGUUa-CGU- -5'
26838 5' -52.6 NC_005809.1 + 38555 0.7 0.513348
Target:  5'- cGCGGCAUGacgcuGGUGGCcgGCGCGuuuuggGCGg -3'
miRNA:   3'- -CGCUGUACg----UCACCGa-CGUGUua----CGU- -5'
26838 5' -52.6 NC_005809.1 + 5635 0.7 0.513348
Target:  5'- cGCGGCGcagcuUGCuGGUGGCUGgACGcgguuUGCAg -3'
miRNA:   3'- -CGCUGU-----ACG-UCACCGACgUGUu----ACGU- -5'
26838 5' -52.6 NC_005809.1 + 12565 0.71 0.44893
Target:  5'- cGCGGCcGUGCAGUuGgaGCACGAUGg- -3'
miRNA:   3'- -CGCUG-UACGUCAcCgaCGUGUUACgu -5'
26838 5' -52.6 NC_005809.1 + 18195 0.72 0.408552
Target:  5'- aGCGAguUGUGGUGGCgaaUGCGCGAaGCc -3'
miRNA:   3'- -CGCUguACGUCACCG---ACGUGUUaCGu -5'
26838 5' -52.6 NC_005809.1 + 37399 0.73 0.370519
Target:  5'- aCGACGUGCAGgcGGUgGCagGCAAUGCGg -3'
miRNA:   3'- cGCUGUACGUCa-CCGaCG--UGUUACGU- -5'
26838 5' -52.6 NC_005809.1 + 14776 0.73 0.334978
Target:  5'- -gGACGUGCuGcGGCUGCGCGGcGCGc -3'
miRNA:   3'- cgCUGUACGuCaCCGACGUGUUaCGU- -5'
26838 5' -52.6 NC_005809.1 + 36106 0.77 0.184245
Target:  5'- cGCGGCGUGCAGUucCUGCGCGAcgGCGa -3'
miRNA:   3'- -CGCUGUACGUCAccGACGUGUUa-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.