miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26840 3' -60.7 NC_005809.1 + 29313 0.66 0.399797
Target:  5'- uGCCCAgCACuucaaGGCGGUggcggUCGCCgGCc -3'
miRNA:   3'- gCGGGUgGUGc----UCGUCA-----AGCGGgCGc -5'
26840 3' -60.7 NC_005809.1 + 16312 0.66 0.399797
Target:  5'- aGCCgACCAgGccGGCGGgu-GCCCGUGc -3'
miRNA:   3'- gCGGgUGGUgC--UCGUCaagCGGGCGC- -5'
26840 3' -60.7 NC_005809.1 + 38839 0.66 0.399797
Target:  5'- cCGCCCucaucaaauCCGCGAGCAugagcGgaUGCgCCGCa -3'
miRNA:   3'- -GCGGGu--------GGUGCUCGU-----CaaGCG-GGCGc -5'
26840 3' -60.7 NC_005809.1 + 2211 0.66 0.390893
Target:  5'- aCGCCCucgucggguagcACCACGcgcAGCAGgcggCGCguggCCGCGc -3'
miRNA:   3'- -GCGGG------------UGGUGC---UCGUCaa--GCG----GGCGC- -5'
26840 3' -60.7 NC_005809.1 + 11601 0.66 0.390893
Target:  5'- gGCUgGCCGcCGGGCAGcagUGCCaGCGg -3'
miRNA:   3'- gCGGgUGGU-GCUCGUCaa-GCGGgCGC- -5'
26840 3' -60.7 NC_005809.1 + 4042 0.66 0.38212
Target:  5'- cCGgCCGCgGCGAGCGGcagGCCaGCGg -3'
miRNA:   3'- -GCgGGUGgUGCUCGUCaagCGGgCGC- -5'
26840 3' -60.7 NC_005809.1 + 17910 0.66 0.374337
Target:  5'- gGCCCGCgGCGGGCGcgacaacaccauccUgGCCCGCc -3'
miRNA:   3'- gCGGGUGgUGCUCGUca------------AgCGGGCGc -5'
26840 3' -60.7 NC_005809.1 + 24576 0.66 0.373479
Target:  5'- gGCCgGCCACGGuCGGgcCGUCCgGCGu -3'
miRNA:   3'- gCGGgUGGUGCUcGUCaaGCGGG-CGC- -5'
26840 3' -60.7 NC_005809.1 + 17847 0.66 0.373479
Target:  5'- uGCCCGCCACcguGGCcucgUCGCCCa-- -3'
miRNA:   3'- gCGGGUGGUGc--UCGuca-AGCGGGcgc -5'
26840 3' -60.7 NC_005809.1 + 3224 0.66 0.373479
Target:  5'- uGCCCGCCACGAuGaauaaUUCGaCCUGCc -3'
miRNA:   3'- gCGGGUGGUGCU-Cguc--AAGC-GGGCGc -5'
26840 3' -60.7 NC_005809.1 + 19053 0.66 0.364972
Target:  5'- uGCgCCGCCugGAa-GGcgCGCUCGCGg -3'
miRNA:   3'- gCG-GGUGGugCUcgUCaaGCGGGCGC- -5'
26840 3' -60.7 NC_005809.1 + 25241 0.66 0.364972
Target:  5'- aGCCCAUgACGAagcGCAccugUUGCUCGCGc -3'
miRNA:   3'- gCGGGUGgUGCU---CGUca--AGCGGGCGC- -5'
26840 3' -60.7 NC_005809.1 + 27418 0.66 0.364972
Target:  5'- uCGCgCGCCugGcGCAccgCGCCCgGCGg -3'
miRNA:   3'- -GCGgGUGGugCuCGUcaaGCGGG-CGC- -5'
26840 3' -60.7 NC_005809.1 + 27529 0.66 0.364972
Target:  5'- uGCCCGCaucaaCGCGGGCA--UCGCCaacaccaaCGCGg -3'
miRNA:   3'- gCGGGUG-----GUGCUCGUcaAGCGG--------GCGC- -5'
26840 3' -60.7 NC_005809.1 + 37964 0.66 0.356599
Target:  5'- cCGCCgacaucauCGCCGaggcCGAGCAGUuccUCGCCUgGCGc -3'
miRNA:   3'- -GCGG--------GUGGU----GCUCGUCA---AGCGGG-CGC- -5'
26840 3' -60.7 NC_005809.1 + 31654 0.66 0.356599
Target:  5'- gGCCCugCaaaccgGCGGGCAGgUCGCCauuccgGUGg -3'
miRNA:   3'- gCGGGugG------UGCUCGUCaAGCGGg-----CGC- -5'
26840 3' -60.7 NC_005809.1 + 26737 0.67 0.348363
Target:  5'- gGgCCACCGCcAGCg---CGCCCGCu -3'
miRNA:   3'- gCgGGUGGUGcUCGucaaGCGGGCGc -5'
26840 3' -60.7 NC_005809.1 + 11491 0.67 0.348363
Target:  5'- uCGCCugcgaCACCGCaaaGGGCAG--CGCCUGCGc -3'
miRNA:   3'- -GCGG-----GUGGUG---CUCGUCaaGCGGGCGC- -5'
26840 3' -60.7 NC_005809.1 + 17420 0.67 0.340263
Target:  5'- gCGCCCAcgucgcCCuuGAGCAGUggcCCCGCc -3'
miRNA:   3'- -GCGGGU------GGugCUCGUCAagcGGGCGc -5'
26840 3' -60.7 NC_005809.1 + 39752 0.67 0.340263
Target:  5'- gCGCgUgGCCGCGAGCAccUgGCCCGaCGa -3'
miRNA:   3'- -GCG-GgUGGUGCUCGUcaAgCGGGC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.