Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26840 | 3' | -60.7 | NC_005809.1 | + | 40576 | 0.7 | 0.210544 |
Target: 5'- gCGCCUgggccucaagaucaGCCACuGGCAGguggCGCCCGUa -3' miRNA: 3'- -GCGGG--------------UGGUGcUCGUCaa--GCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 39752 | 0.67 | 0.340263 |
Target: 5'- gCGCgUgGCCGCGAGCAccUgGCCCGaCGa -3' miRNA: 3'- -GCG-GgUGGUGCUCGUcaAgCGGGC-GC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 38844 | 0.67 | 0.3323 |
Target: 5'- uGCCCACCACcGGCGugaacggcacGggCGCCacgaGCGc -3' miRNA: 3'- gCGGGUGGUGcUCGU----------CaaGCGGg---CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 38839 | 0.66 | 0.399797 |
Target: 5'- cCGCCCucaucaaauCCGCGAGCAugagcGgaUGCgCCGCa -3' miRNA: 3'- -GCGGGu--------GGUGCUCGU-----CaaGCG-GGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 38052 | 0.71 | 0.186188 |
Target: 5'- cCGCCCAgcacgccacguUCACGGGCGc--CGCCCGUGa -3' miRNA: 3'- -GCGGGU-----------GGUGCUCGUcaaGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 37964 | 0.66 | 0.356599 |
Target: 5'- cCGCCgacaucauCGCCGaggcCGAGCAGUuccUCGCCUgGCGc -3' miRNA: 3'- -GCGG--------GUGGU----GCUCGUCA---AGCGGG-CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 36134 | 0.68 | 0.301828 |
Target: 5'- aCGCCU-UCGCGGGCGGUggugUCGCgaGCGa -3' miRNA: 3'- -GCGGGuGGUGCUCGUCA----AGCGggCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 35565 | 0.71 | 0.181338 |
Target: 5'- aCGCCCAUCacGCGAGCcGaccCGCUCGCGc -3' miRNA: 3'- -GCGGGUGG--UGCUCGuCaa-GCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 34040 | 0.7 | 0.201432 |
Target: 5'- gGCCUgcgauACCugG-GCaAGUUCGCCgGCGa -3' miRNA: 3'- gCGGG-----UGGugCuCG-UCAAGCGGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 33374 | 0.67 | 0.340263 |
Target: 5'- gCGCCgCGCCGcCGAGCAGgccaacgUCGaCgGCGc -3' miRNA: 3'- -GCGG-GUGGU-GCUCGUCa------AGCgGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 33016 | 0.69 | 0.243713 |
Target: 5'- uGCUCGCCaccgGCGAGCAGaUCGCacuggccgaacagggCCGCa -3' miRNA: 3'- gCGGGUGG----UGCUCGUCaAGCG---------------GGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 32837 | 1.09 | 0.000232 |
Target: 5'- gCGCCCACCACGAGCAGUUCGCCCGCGg -3' miRNA: 3'- -GCGGGUGGUGCUCGUCAAGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 32673 | 0.74 | 0.10544 |
Target: 5'- uGCCCgacgugaaGCC-CGAGCAGUUCGCCgaCGUGc -3' miRNA: 3'- gCGGG--------UGGuGCUCGUCAAGCGG--GCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 31718 | 0.67 | 0.324475 |
Target: 5'- aGCCCGCCGCGcGCGGgcuuuuucaCGCCUaaaaauauGCGc -3' miRNA: 3'- gCGGGUGGUGCuCGUCaa-------GCGGG--------CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 31654 | 0.66 | 0.356599 |
Target: 5'- gGCCCugCaaaccgGCGGGCAGgUCGCCauuccgGUGg -3' miRNA: 3'- gCGGGugG------UGCUCGUCaAGCGGg-----CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 30891 | 0.67 | 0.308492 |
Target: 5'- aGUCCGCCGCagucugacaccuuGGGCAGUgguguuUCGUCCgGCGu -3' miRNA: 3'- gCGGGUGGUG-------------CUCGUCA------AGCGGG-CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 29313 | 0.66 | 0.399797 |
Target: 5'- uGCCCAgCACuucaaGGCGGUggcggUCGCCgGCc -3' miRNA: 3'- gCGGGUgGUGc----UCGUCA-----AGCGGgCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 28143 | 0.68 | 0.287418 |
Target: 5'- uCGCCCAaCACGGugccGCAGgcgCGCCUgGCGa -3' miRNA: 3'- -GCGGGUgGUGCU----CGUCaa-GCGGG-CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 27667 | 0.7 | 0.212188 |
Target: 5'- gGCCgGCCAgcAGCAGaUCGCCgCGCa -3' miRNA: 3'- gCGGgUGGUgcUCGUCaAGCGG-GCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 27529 | 0.66 | 0.364972 |
Target: 5'- uGCCCGCaucaaCGCGGGCA--UCGCCaacaccaaCGCGg -3' miRNA: 3'- gCGGGUG-----GUGCUCGUcaAGCGG--------GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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