Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26841 | 3' | -58.5 | NC_005809.1 | + | 31841 | 1.05 | 0.000482 |
Target: 5'- cUUGGCGAGCAGCAAGGCGACGACGCAu -3' miRNA: 3'- -AACCGCUCGUCGUUCCGCUGCUGCGU- -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 8564 | 0.78 | 0.057051 |
Target: 5'- aUGGCGGGCAGCGacAGGCGcgacACGACGg- -3' miRNA: 3'- aACCGCUCGUCGU--UCCGC----UGCUGCgu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 24315 | 0.73 | 0.147981 |
Target: 5'- -cGGCGAGCAGCcgcgggucAGGCGgcagaGCGAUGCc -3' miRNA: 3'- aaCCGCUCGUCGu-------UCCGC-----UGCUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 5611 | 0.73 | 0.152182 |
Target: 5'- -cGGCGGGguGCGuuucgcgcguGGCG-CGGCGCAg -3' miRNA: 3'- aaCCGCUCguCGUu---------CCGCuGCUGCGU- -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 22013 | 0.72 | 0.179722 |
Target: 5'- gUGGCucauGAGCAGCAAgcGGgGGCGcCGCAu -3' miRNA: 3'- aACCG----CUCGUCGUU--CCgCUGCuGCGU- -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 31112 | 0.71 | 0.184721 |
Target: 5'- -cGGCGAGUggugcgagauAGCGGGgacuuuucagcGCGACGACGCu -3' miRNA: 3'- aaCCGCUCG----------UCGUUC-----------CGCUGCUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 16238 | 0.71 | 0.184721 |
Target: 5'- -cGGUGAGCGGCAcgauauGGCGgAUGGCGUu -3' miRNA: 3'- aaCCGCUCGUCGUu-----CCGC-UGCUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 38695 | 0.71 | 0.205406 |
Target: 5'- -cGGCGAcgGCAGCGcGGCcuacagcGACGGCGCc -3' miRNA: 3'- aaCCGCU--CGUCGUuCCG-------CUGCUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 17496 | 0.71 | 0.211593 |
Target: 5'- -gGGCGcGCuGCGcuGGGUGGCGAUGCu -3' miRNA: 3'- aaCCGCuCGuCGU--UCCGCUGCUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 34189 | 0.7 | 0.219698 |
Target: 5'- --cGUGGGCGGCGauucucgaagauucgAGcGCGGCGGCGCAg -3' miRNA: 3'- aacCGCUCGUCGU---------------UC-CGCUGCUGCGU- -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 23655 | 0.7 | 0.223252 |
Target: 5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3' miRNA: 3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 4049 | 0.7 | 0.223252 |
Target: 5'- -cGGCGAGCGGC-AGGCcaGCGGCcCAg -3' miRNA: 3'- aaCCGCUCGUCGuUCCGc-UGCUGcGU- -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 24550 | 0.7 | 0.229284 |
Target: 5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3' miRNA: 3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 37216 | 0.7 | 0.235453 |
Target: 5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3' miRNA: 3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 10225 | 0.7 | 0.241761 |
Target: 5'- -cGGCGAccGCAGCGaccuGGGCGGCgguugucggGACGCc -3' miRNA: 3'- aaCCGCU--CGUCGU----UCCGCUG---------CUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 25771 | 0.7 | 0.248209 |
Target: 5'- -gGGCG-GCGGCAAcgauGGCcGCGAUGCGc -3' miRNA: 3'- aaCCGCuCGUCGUU----CCGcUGCUGCGU- -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 37032 | 0.69 | 0.254799 |
Target: 5'- gUGGCGGGCgaccugGGCGgaaccuGGGCGGcCGGCGUg -3' miRNA: 3'- aACCGCUCG------UCGU------UCCGCU-GCUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 14758 | 0.69 | 0.254799 |
Target: 5'- --cGCGGGCAGCGcGcGCGAgGACGUg -3' miRNA: 3'- aacCGCUCGUCGUuC-CGCUgCUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 14711 | 0.69 | 0.264264 |
Target: 5'- aUGGCGAGCgcggacacguucuugAGCAGcGGCGcggcCGGCGCc -3' miRNA: 3'- aACCGCUCG---------------UCGUU-CCGCu---GCUGCGu -5' |
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26841 | 3' | -58.5 | NC_005809.1 | + | 23578 | 0.69 | 0.275429 |
Target: 5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3' miRNA: 3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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