miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26841 3' -58.5 NC_005809.1 + 5476 0.67 0.38923
Target:  5'- -cGGCGAGguGUugccgauggGGGGUacGGCGAUGCu -3'
miRNA:   3'- aaCCGCUCguCG---------UUCCG--CUGCUGCGu -5'
26841 3' -58.5 NC_005809.1 + 36108 0.68 0.304985
Target:  5'- -cGGCGuGCAGUuccuGcGCGACGGCGaCGc -3'
miRNA:   3'- aaCCGCuCGUCGuu--C-CGCUGCUGC-GU- -5'
26841 3' -58.5 NC_005809.1 + 9319 0.68 0.312744
Target:  5'- cUGGCGGcgcacgucggcGCGGC-GGGCGGCGGCa-- -3'
miRNA:   3'- aACCGCU-----------CGUCGuUCCGCUGCUGcgu -5'
26841 3' -58.5 NC_005809.1 + 6508 0.68 0.323857
Target:  5'- gUUGGCGAGCAGUuucuuGGCGAguuuuucggggucguCGuCGCc -3'
miRNA:   3'- -AACCGCUCGUCGuu---CCGCU---------------GCuGCGu -5'
26841 3' -58.5 NC_005809.1 + 2025 0.67 0.352912
Target:  5'- cUGGCGaAGUcGCGcAGGCGAuagaacaCGGCGCGc -3'
miRNA:   3'- aACCGC-UCGuCGU-UCCGCU-------GCUGCGU- -5'
26841 3' -58.5 NC_005809.1 + 15340 0.67 0.353769
Target:  5'- -cGGUGAGCcGUAGGGUucgGACGuGCGCu -3'
miRNA:   3'- aaCCGCUCGuCGUUCCG---CUGC-UGCGu -5'
26841 3' -58.5 NC_005809.1 + 8904 0.67 0.359807
Target:  5'- aUGGCGcuaucGGCGGCGcgcucgauggcuucGGGCGugGACa-- -3'
miRNA:   3'- aACCGC-----UCGUCGU--------------UCCGCugCUGcgu -5'
26841 3' -58.5 NC_005809.1 + 41354 0.67 0.362417
Target:  5'- -aGGgGuauCAGCAaugggucgaaaAGGCGACGGCGUAg -3'
miRNA:   3'- aaCCgCuc-GUCGU-----------UCCGCUGCUGCGU- -5'
26841 3' -58.5 NC_005809.1 + 24837 0.67 0.38923
Target:  5'- aUGGCucGGGCAacgauuGCAGGGUGACGAgauaccCGCu -3'
miRNA:   3'- aACCG--CUCGU------CGUUCCGCUGCU------GCGu -5'
26841 3' -58.5 NC_005809.1 + 17676 0.68 0.297374
Target:  5'- -cGGCGGGCugGGCGuAGGCGAa-GCGCc -3'
miRNA:   3'- aaCCGCUCG--UCGU-UCCGCUgcUGCGu -5'
26841 3' -58.5 NC_005809.1 + 15144 0.68 0.296621
Target:  5'- cUGGCG-GCGGaugcgccCAGGGCGACGGCu-- -3'
miRNA:   3'- aACCGCuCGUC-------GUUCCGCUGCUGcgu -5'
26841 3' -58.5 NC_005809.1 + 23519 0.69 0.289912
Target:  5'- --cGCGAGCGcGCcuuccAGGCGGCGcACGCGg -3'
miRNA:   3'- aacCGCUCGU-CGu----UCCGCUGC-UGCGU- -5'
26841 3' -58.5 NC_005809.1 + 16238 0.71 0.184721
Target:  5'- -cGGUGAGCGGCAcgauauGGCGgAUGGCGUu -3'
miRNA:   3'- aaCCGCUCGUCGUu-----CCGC-UGCUGCGu -5'
26841 3' -58.5 NC_005809.1 + 31112 0.71 0.184721
Target:  5'- -cGGCGAGUggugcgagauAGCGGGgacuuuucagcGCGACGACGCu -3'
miRNA:   3'- aaCCGCUCG----------UCGUUC-----------CGCUGCUGCGu -5'
26841 3' -58.5 NC_005809.1 + 34189 0.7 0.219698
Target:  5'- --cGUGGGCGGCGauucucgaagauucgAGcGCGGCGGCGCAg -3'
miRNA:   3'- aacCGCUCGUCGU---------------UC-CGCUGCUGCGU- -5'
26841 3' -58.5 NC_005809.1 + 23655 0.7 0.223252
Target:  5'- -cGGCGGGCAGCAacugcaccAGGCGACccuCGg- -3'
miRNA:   3'- aaCCGCUCGUCGU--------UCCGCUGcu-GCgu -5'
26841 3' -58.5 NC_005809.1 + 24550 0.7 0.229284
Target:  5'- gUGGuCGcGCAGCGcGGCGAUGGCGa- -3'
miRNA:   3'- aACC-GCuCGUCGUuCCGCUGCUGCgu -5'
26841 3' -58.5 NC_005809.1 + 37216 0.7 0.235453
Target:  5'- -gGGCGcGguGC-AGGCGGCcACGCAg -3'
miRNA:   3'- aaCCGCuCguCGuUCCGCUGcUGCGU- -5'
26841 3' -58.5 NC_005809.1 + 25771 0.7 0.248209
Target:  5'- -gGGCG-GCGGCAAcgauGGCcGCGAUGCGc -3'
miRNA:   3'- aaCCGCuCGUCGUU----CCGcUGCUGCGU- -5'
26841 3' -58.5 NC_005809.1 + 23578 0.69 0.275429
Target:  5'- -gGuGCGGGCGG-GGGGCGACGAUGg- -3'
miRNA:   3'- aaC-CGCUCGUCgUUCCGCUGCUGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.