Results 21 - 40 of 118 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26842 | 3' | -61.9 | NC_005809.1 | + | 8806 | 0.7 | 0.171263 |
Target: 5'- cGCGCCGgucaguACCGAucugcugggucgGGCCAgcCGCAacgcGGGCCa -3' miRNA: 3'- -CGCGGC------UGGCU------------UCGGU--GCGU----CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9008 | 0.67 | 0.278987 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9104 | 0.67 | 0.278987 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9152 | 0.67 | 0.278987 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9200 | 0.67 | 0.278987 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9248 | 0.67 | 0.278987 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9296 | 0.67 | 0.278987 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9344 | 0.67 | 0.278987 |
Target: 5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3' miRNA: 3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 9722 | 0.73 | 0.099477 |
Target: 5'- gGCGCCGACCGucugcGGCCAgGCGaaGCCg -3' miRNA: 3'- -CGCGGCUGGCu----UCGGUgCGUccCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 10464 | 0.7 | 0.161092 |
Target: 5'- gGCGUCGcCCugGAAGUCGCGCAgcaccggcccgaacGGGCCg -3' miRNA: 3'- -CGCGGCuGG--CUUCGGUGCGU--------------CCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 10521 | 0.67 | 0.293027 |
Target: 5'- cUGCUGACCGccGGCCACGCuuuccGCCg -3' miRNA: 3'- cGCGGCUGGCu-UCGGUGCGucc--CGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 10760 | 0.69 | 0.190321 |
Target: 5'- cGCGCuCGACUucGGCC-CGCAGuucuucGGCCUg -3' miRNA: 3'- -CGCG-GCUGGcuUCGGuGCGUC------CCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 10891 | 0.66 | 0.328173 |
Target: 5'- cGCGCgGcguauuccuccACCGGAauggcgaccugcccGCCGguuUGCAGGGCCUc -3' miRNA: 3'- -CGCGgC-----------UGGCUU--------------CGGU---GCGUCCCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 11520 | 0.67 | 0.272171 |
Target: 5'- uGCGCUGGCgUGAGGCCcUGCGagcGGGCa- -3' miRNA: 3'- -CGCGGCUG-GCUUCGGuGCGU---CCCGga -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 11565 | 0.77 | 0.049252 |
Target: 5'- cCGCCGGucaUCGAAGCCAUGCcgcccAGGGCCg -3' miRNA: 3'- cGCGGCU---GGCUUCGGUGCG-----UCCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 12995 | 0.68 | 0.22816 |
Target: 5'- cCGCCcGCCGuucucguacAGGCCGCGCAGcgcaguggcgacGGCCUc -3' miRNA: 3'- cGCGGcUGGC---------UUCGGUGCGUC------------CCGGA- -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 13164 | 0.68 | 0.240084 |
Target: 5'- aUGUCGGCCaGugucGGCCGCGCuGGGCg- -3' miRNA: 3'- cGCGGCUGG-Cu---UCGGUGCGuCCCGga -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 13197 | 0.67 | 0.272171 |
Target: 5'- cGCGCCGAguCCGAGGgCugGggCAaGGCCa -3' miRNA: 3'- -CGCGGCU--GGCUUCgGugC--GUcCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 13290 | 0.75 | 0.071157 |
Target: 5'- aGCGCCGAUUGcAGCgCGC-CGGGGCCg -3' miRNA: 3'- -CGCGGCUGGCuUCG-GUGcGUCCCGGa -5' |
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26842 | 3' | -61.9 | NC_005809.1 | + | 13347 | 0.68 | 0.252523 |
Target: 5'- uCGCCG-CCGAAGUCGCGCAauuGcuucuggaaauaGGCCa -3' miRNA: 3'- cGCGGCuGGCUUCGGUGCGU---C------------CCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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