miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26842 3' -61.9 NC_005809.1 + 402 0.67 0.25894
Target:  5'- aGCGCgCGACUGuuGAGCagCACGUcgcGGGCCa -3'
miRNA:   3'- -CGCG-GCUGGC--UUCG--GUGCGu--CCCGGa -5'
26842 3' -61.9 NC_005809.1 + 497 0.68 0.246238
Target:  5'- cGCGCUGAac-AAGuCCACGUuGGGCCa -3'
miRNA:   3'- -CGCGGCUggcUUC-GGUGCGuCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 692 0.68 0.222388
Target:  5'- gGCGCCGGCCG-GGCCGCccaagauaccGCccaggauaGGGGCg- -3'
miRNA:   3'- -CGCGGCUGGCuUCGGUG----------CG--------UCCCGga -5'
26842 3' -61.9 NC_005809.1 + 811 0.67 0.278987
Target:  5'- cGCGCCGcgcccagcccuuGCCGAacgucGGCCA-GguGGGCa- -3'
miRNA:   3'- -CGCGGC------------UGGCU-----UCGGUgCguCCCGga -5'
26842 3' -61.9 NC_005809.1 + 850 0.67 0.2783
Target:  5'- -aGCCGACCGuGGCCuguauggcuuuCGUuucccuaucgacgAGGGCCg -3'
miRNA:   3'- cgCGGCUGGCuUCGGu----------GCG-------------UCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 1763 0.7 0.171263
Target:  5'- -gGCCGGCCugcGCCugGCGcgucGGGCCg -3'
miRNA:   3'- cgCGGCUGGcuuCGGugCGU----CCCGGa -5'
26842 3' -61.9 NC_005809.1 + 1963 0.66 0.300251
Target:  5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3'
miRNA:   3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5'
26842 3' -61.9 NC_005809.1 + 2762 0.67 0.276928
Target:  5'- cGUGCCGACCacuGCCgacaccucgacguuGCGCAGGuGCg- -3'
miRNA:   3'- -CGCGGCUGGcuuCGG--------------UGCGUCC-CGga -5'
26842 3' -61.9 NC_005809.1 + 3870 0.69 0.211217
Target:  5'- gGCGCCGucGCUGuAGGCCGCGCu--GCCg -3'
miRNA:   3'- -CGCGGC--UGGC-UUCGGUGCGuccCGGa -5'
26842 3' -61.9 NC_005809.1 + 4016 0.73 0.103977
Target:  5'- cGCGCCGGCCaccagcgucauGCCGCGC-GGGUCg -3'
miRNA:   3'- -CGCGGCUGGcuu--------CGGUGCGuCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 5126 0.7 0.158106
Target:  5'- gGCGCCGuugaACUGcaacguGCCGCGCAGGcgGCCg -3'
miRNA:   3'- -CGCGGC----UGGCuu----CGGUGCGUCC--CGGa -5'
26842 3' -61.9 NC_005809.1 + 5753 0.66 0.300251
Target:  5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3'
miRNA:   3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5'
26842 3' -61.9 NC_005809.1 + 6351 0.67 0.293027
Target:  5'- aGCGcCCGGcCCGAAgGCCgggGCGCuGGGUUa -3'
miRNA:   3'- -CGC-GGCU-GGCUU-CGG---UGCGuCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 6549 0.69 0.205814
Target:  5'- gGCGuuGACguaGcAGcCCGCGUAGGGCUUg -3'
miRNA:   3'- -CGCggCUGg--CuUC-GGUGCGUCCCGGA- -5'
26842 3' -61.9 NC_005809.1 + 6642 0.67 0.272171
Target:  5'- cGCGCuUGGCCGGAGuguCCGCGCucauGGUCUg -3'
miRNA:   3'- -CGCG-GCUGGCUUC---GGUGCGuc--CCGGA- -5'
26842 3' -61.9 NC_005809.1 + 7144 0.71 0.141987
Target:  5'- uCGUCGGCUGcGGCCugGaugacCAGGGCCg -3'
miRNA:   3'- cGCGGCUGGCuUCGGugC-----GUCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 7557 0.66 0.330519
Target:  5'- cGCgGCCGGgucguacuuaaUCGGAuaguagccGCCGCGUAGGGUCa -3'
miRNA:   3'- -CG-CGGCU-----------GGCUU--------CGGUGCGUCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 8206 0.66 0.300251
Target:  5'- cGCGCaCGGCCucguAGUCGCGCuggucGGcGGCCg -3'
miRNA:   3'- -CGCG-GCUGGcu--UCGGUGCG-----UC-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 8392 0.73 0.108071
Target:  5'- cGCGCUGGCUGcguAGCCAguCGgcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCu--UCGGU--GC--GUCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 8557 0.7 0.165445
Target:  5'- cGCGCuCGACCucauccugggcgucGuAGGCCGCGCGuGcGGCCUg -3'
miRNA:   3'- -CGCG-GCUGG--------------C-UUCGGUGCGU-C-CCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.