miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26842 3' -61.9 NC_005809.1 + 31711 1.09 0.000152
Target:  5'- cGCGCCGACCGAAGCCACGCAGGGCCUg -3'
miRNA:   3'- -CGCGGCUGGCUUCGGUGCGUCCCGGA- -5'
26842 3' -61.9 NC_005809.1 + 31026 0.8 0.030282
Target:  5'- uUGCCGGCCGAGGCaauCGCGcGGGCCa -3'
miRNA:   3'- cGCGGCUGGCUUCGgu-GCGU-CCCGGa -5'
26842 3' -61.9 NC_005809.1 + 11565 0.77 0.049252
Target:  5'- cCGCCGGucaUCGAAGCCAUGCcgcccAGGGCCg -3'
miRNA:   3'- cGCGGCU---GGCUUCGGUGCG-----UCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 19615 0.77 0.053637
Target:  5'- uUGCCGuCCGggGUCAUGC-GGGCCg -3'
miRNA:   3'- cGCGGCuGGCuuCGGUGCGuCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 34461 0.76 0.0584
Target:  5'- aCGCCGGCCGc-GCgGUGCAGGGCCUc -3'
miRNA:   3'- cGCGGCUGGCuuCGgUGCGUCCCGGA- -5'
26842 3' -61.9 NC_005809.1 + 35225 0.76 0.060076
Target:  5'- aCGCCGAggUCGAGGCCGCGCucaaGGCCa -3'
miRNA:   3'- cGCGGCU--GGCUUCGGUGCGuc--CCGGa -5'
26842 3' -61.9 NC_005809.1 + 41889 0.75 0.067261
Target:  5'- gGCGgcCCGGCCGgcGCCGcCGUAGGcGCCUg -3'
miRNA:   3'- -CGC--GGCUGGCuuCGGU-GCGUCC-CGGA- -5'
26842 3' -61.9 NC_005809.1 + 13290 0.75 0.071157
Target:  5'- aGCGCCGAUUGcAGCgCGC-CGGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCuUCG-GUGcGUCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 18133 0.75 0.074013
Target:  5'- aUGUCG-CCGAGGCCGCGCGcggcaccgacaaaucGGGCCg -3'
miRNA:   3'- cGCGGCuGGCUUCGGUGCGU---------------CCCGGa -5'
26842 3' -61.9 NC_005809.1 + 33719 0.74 0.07961
Target:  5'- cGUGgCGACCGAGGCCaACGCGcuGGCCc -3'
miRNA:   3'- -CGCgGCUGGCUUCGG-UGCGUc-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 35342 0.74 0.084189
Target:  5'- cGCGCCaguGGCCGAAGU--UGCAGGGCUUc -3'
miRNA:   3'- -CGCGG---CUGGCUUCGguGCGUCCCGGA- -5'
26842 3' -61.9 NC_005809.1 + 30280 0.73 0.09411
Target:  5'- aCGCCG-CCGuAGCCggcACGCuGGGCCa -3'
miRNA:   3'- cGCGGCuGGCuUCGG---UGCGuCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 30558 0.73 0.09411
Target:  5'- uCGCCGGCCacGGCCGCGCugcuGGCCg -3'
miRNA:   3'- cGCGGCUGGcuUCGGUGCGuc--CCGGa -5'
26842 3' -61.9 NC_005809.1 + 9722 0.73 0.099477
Target:  5'- gGCGCCGACCGucugcGGCCAgGCGaaGCCg -3'
miRNA:   3'- -CGCGGCUGGCu----UCGGUgCGUccCGGa -5'
26842 3' -61.9 NC_005809.1 + 4016 0.73 0.103977
Target:  5'- cGCGCCGGCCaccagcgucauGCCGCGC-GGGUCg -3'
miRNA:   3'- -CGCGGCUGGcuu--------CGGUGCGuCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 16968 0.73 0.108071
Target:  5'- cGCGCCG-CCGugguuGCCACuGCcuGGGCCg -3'
miRNA:   3'- -CGCGGCuGGCuu---CGGUG-CGu-CCCGGa -5'
26842 3' -61.9 NC_005809.1 + 8392 0.73 0.108071
Target:  5'- cGCGCUGGCUGcguAGCCAguCGgcCAGGGCCg -3'
miRNA:   3'- -CGCGGCUGGCu--UCGGU--GC--GUCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 37697 0.73 0.111087
Target:  5'- -gGCCG-CCGucGCCGCGCuGGGCa- -3'
miRNA:   3'- cgCGGCuGGCuuCGGUGCGuCCCGga -5'
26842 3' -61.9 NC_005809.1 + 23882 0.72 0.113869
Target:  5'- uGCuGCUGACCGAGGcCCGCGUGGuguaacaGGCCg -3'
miRNA:   3'- -CG-CGGCUGGCUUC-GGUGCGUC-------CCGGa -5'
26842 3' -61.9 NC_005809.1 + 13462 0.72 0.117358
Target:  5'- cGCGCgUGACCGGcagcaAGUCcCGCAcGGGCCUg -3'
miRNA:   3'- -CGCG-GCUGGCU-----UCGGuGCGU-CCCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.