Results 41 - 60 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26843 | 3' | -60.5 | NC_005809.1 | + | 18066 | 0.67 | 0.316991 |
Target: 5'- gGCGCGgGguGCGUGC-UGGGCcGCCg -3' miRNA: 3'- -CGCGUgCguUGCACGcGUCCGcCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 12357 | 0.67 | 0.316991 |
Target: 5'- uCGC-CGaguGCGUGCGCGugcucaagcccGGCGGCUa -3' miRNA: 3'- cGCGuGCgu-UGCACGCGU-----------CCGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 35951 | 0.67 | 0.316991 |
Target: 5'- cCGCGCGCAGCGccacGCGCccGCuGGUCa -3' miRNA: 3'- cGCGUGCGUUGCa---CGCGucCG-CCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 38058 | 0.67 | 0.309412 |
Target: 5'- -aGCACGCcACGUuCaCGGGCGccGCCCg -3' miRNA: 3'- cgCGUGCGuUGCAcGcGUCCGC--CGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 29569 | 0.67 | 0.309412 |
Target: 5'- uGCGCuGCGCGGCcUGUacgagaacgGCGGGCGGUUUu -3' miRNA: 3'- -CGCG-UGCGUUGcACG---------CGUCCGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 19734 | 0.67 | 0.309412 |
Target: 5'- aGCGCGCGCuguCGgcUGUcgGCAGcGCGGCg- -3' miRNA: 3'- -CGCGUGCGuu-GC--ACG--CGUC-CGCCGgg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 35711 | 0.67 | 0.309412 |
Target: 5'- aCGUGC-CGACGUG-GUGGGgGGCCUa -3' miRNA: 3'- cGCGUGcGUUGCACgCGUCCgCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 23834 | 0.67 | 0.309412 |
Target: 5'- uGCgGCAC-CGGCGUGaccaGCAGGCaGGCg- -3' miRNA: 3'- -CG-CGUGcGUUGCACg---CGUCCG-CCGgg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 41583 | 0.67 | 0.309412 |
Target: 5'- gGCGCGgGCAGCGggcugacgGUGaaGGGCuGGCUCg -3' miRNA: 3'- -CGCGUgCGUUGCa-------CGCg-UCCG-CCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 16296 | 0.68 | 0.304932 |
Target: 5'- uCGCGCGCGAUGcGCgagccgaccaggccgGCGGGU-GCCCg -3' miRNA: 3'- cGCGUGCGUUGCaCG---------------CGUCCGcCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 2022 | 0.68 | 0.301973 |
Target: 5'- uCGCugGCGAaGUcGCGCAGGCgauagaacacGGCgCg -3' miRNA: 3'- cGCGugCGUUgCA-CGCGUCCG----------CCGgG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 10172 | 0.68 | 0.301973 |
Target: 5'- -gGCGCGCGGCuuuuuuucgGUGCuggcuuccuGCuGGGCGGCCg -3' miRNA: 3'- cgCGUGCGUUG---------CACG---------CG-UCCGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 24515 | 0.68 | 0.301973 |
Target: 5'- -aGCACGCAcCccGCGCcGGUaaGGCCCc -3' miRNA: 3'- cgCGUGCGUuGcaCGCGuCCG--CCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 26010 | 0.68 | 0.294672 |
Target: 5'- cGCGuCGCGCuacAACGUcuauaaggaGCaAGGCGGCCUg -3' miRNA: 3'- -CGC-GUGCG---UUGCAcg-------CG-UCCGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 40811 | 0.68 | 0.294672 |
Target: 5'- cCGaCGCGCca-G-GCGCAGGCcGGCCa -3' miRNA: 3'- cGC-GUGCGuugCaCGCGUCCG-CCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 28724 | 0.68 | 0.294672 |
Target: 5'- gGCGCACGCGAgGaugaGCGCcuuGGCaucGUCCa -3' miRNA: 3'- -CGCGUGCGUUgCa---CGCGu--CCGc--CGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 34268 | 0.68 | 0.294672 |
Target: 5'- aGCaGCGCGCAcCGcugGCugcacugccccgGCAGcGUGGCCCu -3' miRNA: 3'- -CG-CGUGCGUuGCa--CG------------CGUC-CGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 20611 | 0.68 | 0.29395 |
Target: 5'- cGC-CAgGCGGCGU-CGCAGGUcggugucGGCCUg -3' miRNA: 3'- -CGcGUgCGUUGCAcGCGUCCG-------CCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 2417 | 0.68 | 0.287509 |
Target: 5'- aGCGUAgGUGuACG-GCaGCAGGCcGGCCUc -3' miRNA: 3'- -CGCGUgCGU-UGCaCG-CGUCCG-CCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 20800 | 0.68 | 0.287509 |
Target: 5'- -gGaCAUcaGCAcCGUGC-CGGGCGGCCUg -3' miRNA: 3'- cgC-GUG--CGUuGCACGcGUCCGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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