Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26843 | 3' | -60.5 | NC_005809.1 | + | 17802 | 0.66 | 0.373053 |
Target: 5'- aGCGCGCGCAguauuccgccugcACGgaacccucGgGCGGGUugauGCCCg -3' miRNA: 3'- -CGCGUGCGU-------------UGCa-------CgCGUCCGc---CGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 24117 | 0.66 | 0.36031 |
Target: 5'- uGCGCGCGUAGgggucguaguccagcCGgcUGCGCGccUGGCCCa -3' miRNA: 3'- -CGCGUGCGUU---------------GC--ACGCGUccGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 12286 | 0.66 | 0.382591 |
Target: 5'- uUGCugGCccAGCGUGCcgGCuacGGCGGCg- -3' miRNA: 3'- cGCGugCG--UUGCACG--CGu--CCGCCGgg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 14905 | 0.66 | 0.400343 |
Target: 5'- uGCGCG-GCGAUcUGCuGCuGGCcGGCCUc -3' miRNA: 3'- -CGCGUgCGUUGcACG-CGuCCG-CCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 3562 | 0.66 | 0.356963 |
Target: 5'- aGCGCA-GCAGCGggcuggGCGUAcaccgauccGCGGCCg -3' miRNA: 3'- -CGCGUgCGUUGCa-----CGCGUc--------CGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 14386 | 0.66 | 0.382591 |
Target: 5'- cGCGCcgcggaacguagGCGUAGCGaagcuggGCGUcgccAGGCGcGCCUg -3' miRNA: 3'- -CGCG------------UGCGUUGCa------CGCG----UCCGC-CGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 24623 | 0.66 | 0.382591 |
Target: 5'- aGCgGCACGUcgaaccacauGGCGUGC-C-GGCGGgCCa -3' miRNA: 3'- -CG-CGUGCG----------UUGCACGcGuCCGCCgGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 23523 | 0.66 | 0.356963 |
Target: 5'- -aGCGCGCcuuccaGGCG-GCGCAcGCGGUCg -3' miRNA: 3'- cgCGUGCG------UUGCaCGCGUcCGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 36317 | 0.66 | 0.355298 |
Target: 5'- cGCGCAgaucaacCGCAcCGUuaccggcGUGCAGGCccuGGCCg -3' miRNA: 3'- -CGCGU-------GCGUuGCA-------CGCGUCCG---CCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 2226 | 0.66 | 0.391402 |
Target: 5'- -aGCAC-C-ACGcGCaGCAGGCGGCgCg -3' miRNA: 3'- cgCGUGcGuUGCaCG-CGUCCGCCGgG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 32038 | 0.66 | 0.400343 |
Target: 5'- uUGCGCGUGGCG-GCGgaaAGcGUGGCCg -3' miRNA: 3'- cGCGUGCGUUGCaCGCg--UC-CGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 15215 | 0.66 | 0.356963 |
Target: 5'- -gGCugGaCGA-GUGCuGCgAGGuCGGCCCg -3' miRNA: 3'- cgCGugC-GUUgCACG-CG-UCC-GCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 28362 | 0.66 | 0.401245 |
Target: 5'- aGCGCGCggaugguuuccuugGCGAgGUGUuccaguucgacgccgGCGGcGCGGCgCCa -3' miRNA: 3'- -CGCGUG--------------CGUUgCACG---------------CGUC-CGCCG-GG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 1687 | 0.66 | 0.381717 |
Target: 5'- cGCGCAgGUAGucgagaaauucgcCGUGgGCcGGCGuGCCg -3' miRNA: 3'- -CGCGUgCGUU-------------GCACgCGuCCGC-CGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 5338 | 0.66 | 0.356963 |
Target: 5'- gGCGCA-GCAugGcaucGCGCuGcGUGGCCg -3' miRNA: 3'- -CGCGUgCGUugCa---CGCGuC-CGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 17634 | 0.66 | 0.400343 |
Target: 5'- uUGC-CGCAuCGUGCgGCAGuaCGGCCa -3' miRNA: 3'- cGCGuGCGUuGCACG-CGUCc-GCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 42119 | 0.66 | 0.373913 |
Target: 5'- aGCGCcCGCAAgcUGgccGCGCAG-CaGCCCa -3' miRNA: 3'- -CGCGuGCGUU--GCa--CGCGUCcGcCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 8656 | 0.66 | 0.356963 |
Target: 5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3' miRNA: 3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 16522 | 0.66 | 0.36537 |
Target: 5'- aGCGCAUGgAGCGcgcccgccGCGCGGGCuuugauGCCa -3' miRNA: 3'- -CGCGUGCgUUGCa-------CGCGUCCGc-----CGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 38132 | 0.66 | 0.391402 |
Target: 5'- cCGCACGCcuGGCG-GUGUu-GCGGCCg -3' miRNA: 3'- cGCGUGCG--UUGCaCGCGucCGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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