Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26843 | 3' | -60.5 | NC_005809.1 | + | 4517 | 0.7 | 0.196036 |
Target: 5'- gGCGCccgugaACGUGGCGUGC-UGGGCGGUCg -3' miRNA: 3'- -CGCG------UGCGUUGCACGcGUCCGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 28648 | 0.73 | 0.138387 |
Target: 5'- cCGCGCGCAGugccagauCG-GUGCcGGCGGCCUc -3' miRNA: 3'- cGCGUGCGUU--------GCaCGCGuCCGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 8750 | 0.72 | 0.150127 |
Target: 5'- gGCGCGCGCGuauucACGUGCcgcuucggGCAGcacGCGGCgCa -3' miRNA: 3'- -CGCGUGCGU-----UGCACG--------CGUC---CGCCGgG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 39737 | 0.72 | 0.150127 |
Target: 5'- gGUGCugGCGcCGcUGCGCGuGGCcgcgagcaccuGGCCCg -3' miRNA: 3'- -CGCGugCGUuGC-ACGCGU-CCG-----------CCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 11503 | 0.72 | 0.15845 |
Target: 5'- cCGCAaaggGCAGCGccUGCGCuGGCgugaGGCCCu -3' miRNA: 3'- cGCGUg---CGUUGC--ACGCGuCCG----CCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 27418 | 0.72 | 0.15845 |
Target: 5'- uCGCGCGCcuGGCGcaccGCGCccGGCGGCCg -3' miRNA: 3'- cGCGUGCG--UUGCa---CGCGu-CCGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 41758 | 0.71 | 0.16585 |
Target: 5'- uGCGCGCGCucaagcccAgccaccugcugacgGCGauUGCGCA-GCGGCCCg -3' miRNA: 3'- -CGCGUGCG--------U--------------UGC--ACGCGUcCGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 27574 | 0.71 | 0.167187 |
Target: 5'- cGCGUAaaggGCAcCG-GCaGCAGGCGGCgCCa -3' miRNA: 3'- -CGCGUg---CGUuGCaCG-CGUCCGCCG-GG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 30423 | 0.71 | 0.185966 |
Target: 5'- -gGCAUgGCGAUGaGCGCGGGCagGGCCUc -3' miRNA: 3'- cgCGUG-CGUUGCaCGCGUCCG--CCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 33066 | 0.73 | 0.138387 |
Target: 5'- uGCGCuucaucgggucGCGCAGCGa-CGC-GGCGGCCUa -3' miRNA: 3'- -CGCG-----------UGCGUUGCacGCGuCCGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 27824 | 0.73 | 0.12068 |
Target: 5'- cGCGCGCGCuGCccGCGguGGCgccGGCCg -3' miRNA: 3'- -CGCGUGCGuUGcaCGCguCCG---CCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 18845 | 0.73 | 0.12068 |
Target: 5'- cGCgGCAUGUAGaagGC-CGGGCGGCCCa -3' miRNA: 3'- -CG-CGUGCGUUgcaCGcGUCCGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 31043 | 0.78 | 0.058167 |
Target: 5'- cGCGCGgGcCAACGUGCGCGaa-GGCCCg -3' miRNA: 3'- -CGCGUgC-GUUGCACGCGUccgCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 507 | 0.77 | 0.061575 |
Target: 5'- uGCGC-CGCGGCG-GCuuGCAGGCGGUUCu -3' miRNA: 3'- -CGCGuGCGUUGCaCG--CGUCCGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 37194 | 0.77 | 0.069767 |
Target: 5'- cGCGCAC-CAgugacauaacccuggGCGcgGUGCAGGCGGCCa -3' miRNA: 3'- -CGCGUGcGU---------------UGCa-CGCGUCCGCCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 27479 | 0.76 | 0.077239 |
Target: 5'- cGCGCACGCAccacGCGagGaUGCcGGCGGCCUc -3' miRNA: 3'- -CGCGUGCGU----UGCa-C-GCGuCCGCCGGG- -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 9324 | 0.75 | 0.088898 |
Target: 5'- gGCGCACGuCGGCGcG-GCGGGCGGCg- -3' miRNA: 3'- -CGCGUGC-GUUGCaCgCGUCCGCCGgg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 9219 | 0.75 | 0.099411 |
Target: 5'- gGCGCACGUucuGCG-GCGCGcccGGCGGCa- -3' miRNA: 3'- -CGCGUGCGu--UGCaCGCGU---CCGCCGgg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 24555 | 0.74 | 0.114205 |
Target: 5'- cGCGCAgCGCGGCGaugGCG-AGGCcGGCCa -3' miRNA: 3'- -CGCGU-GCGUUGCa--CGCgUCCG-CCGGg -5' |
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26843 | 3' | -60.5 | NC_005809.1 | + | 8224 | 0.74 | 0.117077 |
Target: 5'- cGCGCugGuCGGCGgccgucagcagcuUGCGCuucaaGCGGCCCa -3' miRNA: 3'- -CGCGugC-GUUGC-------------ACGCGuc---CGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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