miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26845 5' -54.6 NC_005809.1 + 30680 1.08 0.00084
Target:  5'- gGUCAGCGCACCCGACCAGAAGAACACc -3'
miRNA:   3'- -CAGUCGCGUGGGCUGGUCUUCUUGUG- -5'
26845 5' -54.6 NC_005809.1 + 32867 0.83 0.056231
Target:  5'- gGUCGGCGCcgagauugucgcGCCCGACUGGAAGGACAa -3'
miRNA:   3'- -CAGUCGCG------------UGGGCUGGUCUUCUUGUg -5'
26845 5' -54.6 NC_005809.1 + 12562 0.74 0.237579
Target:  5'- --gGGCGCGgCCGugCAGuuGGAGCACg -3'
miRNA:   3'- cagUCGCGUgGGCugGUCu-UCUUGUG- -5'
26845 5' -54.6 NC_005809.1 + 25091 0.74 0.237579
Target:  5'- -gCAGCGCGCCCGGCgCcGuGGGAUACa -3'
miRNA:   3'- caGUCGCGUGGGCUG-GuCuUCUUGUG- -5'
26845 5' -54.6 NC_005809.1 + 30357 0.73 0.271356
Target:  5'- gGUguGCuGCGuCCCGACCAGggGcaggcAGCGCg -3'
miRNA:   3'- -CAguCG-CGU-GGGCUGGUCuuC-----UUGUG- -5'
26845 5' -54.6 NC_005809.1 + 38479 0.71 0.358983
Target:  5'- uUCAGCGCcgcccACCUGGCCGGccuGAugGCu -3'
miRNA:   3'- cAGUCGCG-----UGGGCUGGUCuu-CUugUG- -5'
26845 5' -54.6 NC_005809.1 + 6343 0.71 0.367866
Target:  5'- -cCAGCcaaaGCGCCCGGCCcGAAGGccgggGCGCu -3'
miRNA:   3'- caGUCG----CGUGGGCUGGuCUUCU-----UGUG- -5'
26845 5' -54.6 NC_005809.1 + 32693 0.71 0.386079
Target:  5'- -cCA-CGCGCCUGGCCgAGAAGcAGCGCg -3'
miRNA:   3'- caGUcGCGUGGGCUGG-UCUUC-UUGUG- -5'
26845 5' -54.6 NC_005809.1 + 40628 0.71 0.386079
Target:  5'- ---cGCGCGCUCGACCAGAAcc-CGCa -3'
miRNA:   3'- caguCGCGUGGGCUGGUCUUcuuGUG- -5'
26845 5' -54.6 NC_005809.1 + 36218 0.7 0.395406
Target:  5'- -cCAGCGC-CCCGGCCuucgGGccGGGCGCu -3'
miRNA:   3'- caGUCGCGuGGGCUGG----UCuuCUUGUG- -5'
26845 5' -54.6 NC_005809.1 + 28720 0.7 0.395406
Target:  5'- uGUCGGCGCACgCGA--GGAuGAGCGCc -3'
miRNA:   3'- -CAGUCGCGUGgGCUggUCUuCUUGUG- -5'
26845 5' -54.6 NC_005809.1 + 23426 0.7 0.395406
Target:  5'- gGUCAGUGCgACgCCGGCCGGGaugcGGAugguucGCGCg -3'
miRNA:   3'- -CAGUCGCG-UG-GGCUGGUCU----UCU------UGUG- -5'
26845 5' -54.6 NC_005809.1 + 27944 0.7 0.404877
Target:  5'- aUCuGCGCACCgGcGCCGGAAGcauggaagccGACGCa -3'
miRNA:   3'- cAGuCGCGUGGgC-UGGUCUUC----------UUGUG- -5'
26845 5' -54.6 NC_005809.1 + 14365 0.69 0.454299
Target:  5'- cGUCGGCGUGgCCGACCuGGAcaaGGCGCc -3'
miRNA:   3'- -CAGUCGCGUgGGCUGGuCUUc--UUGUG- -5'
26845 5' -54.6 NC_005809.1 + 39528 0.69 0.464572
Target:  5'- ---cGUGCugCUGACCAGGauGGAGCAg -3'
miRNA:   3'- caguCGCGugGGCUGGUCU--UCUUGUg -5'
26845 5' -54.6 NC_005809.1 + 32657 0.69 0.485473
Target:  5'- uUCGGCGCcgcgaagcuGCCCGACguGAAgcccGAGCAg -3'
miRNA:   3'- cAGUCGCG---------UGGGCUGguCUU----CUUGUg -5'
26845 5' -54.6 NC_005809.1 + 42264 0.68 0.506811
Target:  5'- -aCGGCaCGCCCuGGaCGGAAGAGCGCg -3'
miRNA:   3'- caGUCGcGUGGG-CUgGUCUUCUUGUG- -5'
26845 5' -54.6 NC_005809.1 + 28316 0.68 0.51763
Target:  5'- cUCGGCGCGCUCGGCguCGGAcucGAugGCc -3'
miRNA:   3'- cAGUCGCGUGGGCUG--GUCUu--CUugUG- -5'
26845 5' -54.6 NC_005809.1 + 8722 0.68 0.52854
Target:  5'- uGUC-GCGCACCUugaGCCGGGacaccAGGGCGCg -3'
miRNA:   3'- -CAGuCGCGUGGGc--UGGUCU-----UCUUGUG- -5'
26845 5' -54.6 NC_005809.1 + 35032 0.68 0.550603
Target:  5'- -cCGGcCGCgaGCCagCGugCGGAAGAACACu -3'
miRNA:   3'- caGUC-GCG--UGG--GCugGUCUUCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.