Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 4214 | 0.67 | 0.60681 |
Target: 5'- aUCGGCGCGCaCCGugCcaucgucgcAGAcguAGAugGCg -3' miRNA: 3'- cAGUCGCGUG-GGCugG---------UCU---UCUugUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 6343 | 0.71 | 0.367866 |
Target: 5'- -cCAGCcaaaGCGCCCGGCCcGAAGGccgggGCGCu -3' miRNA: 3'- caGUCG----CGUGGGCUGGuCUUCU-----UGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 6565 | 0.67 | 0.584191 |
Target: 5'- cGUCAGCGCAUCCuugaGGAAGuagcccAGCACg -3' miRNA: 3'- -CAGUCGCGUGGGcuggUCUUC------UUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 6638 | 0.66 | 0.652244 |
Target: 5'- uUC-GCGCGCuuGGCCGGAGuGuccGCGCu -3' miRNA: 3'- cAGuCGCGUGggCUGGUCUU-Cu--UGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 7145 | 0.67 | 0.61816 |
Target: 5'- cGUCGGCuGCgGCCUggauGACCAGGGccGGGCGCu -3' miRNA: 3'- -CAGUCG-CG-UGGG----CUGGUCUU--CUUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 8722 | 0.68 | 0.52854 |
Target: 5'- uGUC-GCGCACCUugaGCCGGGacaccAGGGCGCg -3' miRNA: 3'- -CAGuCGCGUGGGc--UGGUCU-----UCUUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 9231 | 0.66 | 0.663581 |
Target: 5'- -gCGGCGCGCCCGGCggCAGuuccAGuuCACc -3' miRNA: 3'- caGUCGCGUGGGCUG--GUCu---UCuuGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 10013 | 0.66 | 0.674887 |
Target: 5'- ---cGCGCGCCCGGCCcccgcccuGGuAGAACu- -3' miRNA: 3'- caguCGCGUGGGCUGG--------UCuUCUUGug -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 12562 | 0.74 | 0.237579 |
Target: 5'- --gGGCGCGgCCGugCAGuuGGAGCACg -3' miRNA: 3'- cagUCGCGUgGGCugGUCu-UCUUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 13001 | 0.66 | 0.663581 |
Target: 5'- --gGGCGCGgCCGACCuGAcgcgauaccccGAGCACg -3' miRNA: 3'- cagUCGCGUgGGCUGGuCUu----------CUUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 14365 | 0.69 | 0.454299 |
Target: 5'- cGUCGGCGUGgCCGACCuGGAcaaGGCGCc -3' miRNA: 3'- -CAGUCGCGUgGGCUGGuCUUc--UUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 16829 | 0.67 | 0.595484 |
Target: 5'- -gCAGCGCGCCCaGcgugcugccGCCGGuGAGGACGa -3' miRNA: 3'- caGUCGCGUGGG-C---------UGGUC-UUCUUGUg -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 23426 | 0.7 | 0.395406 |
Target: 5'- gGUCAGUGCgACgCCGGCCGGGaugcGGAugguucGCGCg -3' miRNA: 3'- -CAGUCGCG-UG-GGCUGGUCU----UCU------UGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 23943 | 0.66 | 0.652244 |
Target: 5'- gGUCAGgCGcCGCCCGGCgAGGucGGCAUu -3' miRNA: 3'- -CAGUC-GC-GUGGGCUGgUCUucUUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 25091 | 0.74 | 0.237579 |
Target: 5'- -gCAGCGCGCCCGGCgCcGuGGGAUACa -3' miRNA: 3'- caGUCGCGUGGGCUG-GuCuUCUUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 26746 | 0.66 | 0.640888 |
Target: 5'- -cCAGCGCGCCCGcugcgauuCCAuAAG-GCGCa -3' miRNA: 3'- caGUCGCGUGGGCu-------GGUcUUCuUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 27944 | 0.7 | 0.404877 |
Target: 5'- aUCuGCGCACCgGcGCCGGAAGcauggaagccGACGCa -3' miRNA: 3'- cAGuCGCGUGGgC-UGGUCUUC----------UUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 28316 | 0.68 | 0.51763 |
Target: 5'- cUCGGCGCGCUCGGCguCGGAcucGAugGCc -3' miRNA: 3'- cAGUCGCGUGGGCUG--GUCUu--CUugUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 28372 | 0.66 | 0.640888 |
Target: 5'- ---cGCuGCGCCUGACCuauGAcaAGGACACc -3' miRNA: 3'- caguCG-CGUGGGCUGGu--CU--UCUUGUG- -5' |
|||||||
26845 | 5' | -54.6 | NC_005809.1 | + | 28720 | 0.7 | 0.395406 |
Target: 5'- uGUCGGCGCACgCGA--GGAuGAGCGCc -3' miRNA: 3'- -CAGUCGCGUGgGCUggUCUuCUUGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home