Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26849 | 3' | -60.1 | NC_005809.1 | + | 4503 | 0.66 | 0.410598 |
Target: 5'- --aUGCGCGCGgcgccacAGGCgcuUGAGCGCa -3' miRNA: 3'- cuaACGCGCGCacc----UCCG---GCUCGCGg -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 5353 | 0.66 | 0.410598 |
Target: 5'- ---cGCGCuGCGUGGccGCCugcaccGCGCCc -3' miRNA: 3'- cuaaCGCG-CGCACCucCGGcu----CGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 38743 | 0.66 | 0.401449 |
Target: 5'- ---aGUGCGC-UGGAuuGGUCGcaacGGCGCCc -3' miRNA: 3'- cuaaCGCGCGcACCU--CCGGC----UCGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 32469 | 0.66 | 0.401449 |
Target: 5'- --cUGC-CGagGUGGGggcGGCCGAuGCGCCc -3' miRNA: 3'- cuaACGcGCg-CACCU---CCGGCU-CGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 12683 | 0.66 | 0.392429 |
Target: 5'- ---gGCGCGUGUcGAGGCC---CGCCu -3' miRNA: 3'- cuaaCGCGCGCAcCUCCGGcucGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 21986 | 0.66 | 0.383543 |
Target: 5'- gGAUUcGCGCaGCGUGcGGGUuuCGucGGCGCCu -3' miRNA: 3'- -CUAA-CGCG-CGCACcUCCG--GC--UCGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 27826 | 0.66 | 0.383543 |
Target: 5'- ---cGCGCGCugcccgcgGUGGc-GCCGGccGCGCCg -3' miRNA: 3'- cuaaCGCGCG--------CACCucCGGCU--CGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 39483 | 0.66 | 0.374792 |
Target: 5'- uGGUUGcCGCGUGUcgaagggcauGGGugcGGCuCGGGCGCUu -3' miRNA: 3'- -CUAAC-GCGCGCA----------CCU---CCG-GCUCGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 6637 | 0.66 | 0.374792 |
Target: 5'- --cUGCGCGCGgacacguacaGGuuGCCGGGgaaGCCg -3' miRNA: 3'- cuaACGCGCGCa---------CCucCGGCUCg--CGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 27017 | 0.66 | 0.366176 |
Target: 5'- uGAcgGCGCcauugaccugGaCGUGGAGGCCG-GCaCCg -3' miRNA: 3'- -CUaaCGCG----------C-GCACCUCCGGCuCGcGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 27667 | 0.67 | 0.349358 |
Target: 5'- --gUGgGCGCcaccuccaccGUGGucuuggaauacAGGCCGcGCGCCg -3' miRNA: 3'- cuaACgCGCG----------CACC-----------UCCGGCuCGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 34368 | 0.67 | 0.349358 |
Target: 5'- ---aGCGCGacuacGAGGCCGuGCGCg -3' miRNA: 3'- cuaaCGCGCgcac-CUCCGGCuCGCGg -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 28623 | 0.67 | 0.32833 |
Target: 5'- ---cGgGCGCGgauGAGGCCGgccaguuccgcgcgcAGUGCCa -3' miRNA: 3'- cuaaCgCGCGCac-CUCCGGC---------------UCGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 18841 | 0.68 | 0.309763 |
Target: 5'- -uUUGCGCGgcaUGUaGaAGGCCGGGCgGCCc -3' miRNA: 3'- cuAACGCGC---GCAcC-UCCGGCUCG-CGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 26239 | 0.68 | 0.287693 |
Target: 5'- -uUUGCGCGCGUcGccgaAGGCaCGGGCacccGCCg -3' miRNA: 3'- cuAACGCGCGCAcC----UCCG-GCUCG----CGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 7151 | 0.68 | 0.286979 |
Target: 5'- --cUGCG-GCcUGGAugaccagGGCCGGGCGCUu -3' miRNA: 3'- cuaACGCgCGcACCU-------CCGGCUCGCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 23895 | 0.68 | 0.273679 |
Target: 5'- ---gGCcCGCGUGGuguaacAGGCCGGGgGCg -3' miRNA: 3'- cuaaCGcGCGCACC------UCCGGCUCgCGg -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 6274 | 0.69 | 0.253692 |
Target: 5'- --cUGCGCGC-UGGgcAGGCCGAacagGuCGCCc -3' miRNA: 3'- cuaACGCGCGcACC--UCCGGCU----C-GCGG- -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 11172 | 0.69 | 0.253046 |
Target: 5'- cGUUGCGUGCGcUGGucGGCCGuggugauGGUGCg -3' miRNA: 3'- cUAACGCGCGC-ACCu-CCGGC-------UCGCGg -5' |
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26849 | 3' | -60.1 | NC_005809.1 | + | 15418 | 0.69 | 0.241044 |
Target: 5'- cGcgUGCgGCGCGUGGGGGacuuCGAGUGa- -3' miRNA: 3'- -CuaACG-CGCGCACCUCCg---GCUCGCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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