Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26850 | 3' | -65.6 | NC_005809.1 | + | 40828 | 0.66 | 0.22554 |
Target: 5'- -gGCCGGCCAugacCGCCCGGUGUu- -3' miRNA: 3'- ugCGGCCGGUucccGCGGGUCGCGcc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 455 | 0.66 | 0.22554 |
Target: 5'- cUGCgCGGCCAGcuugcGGGCGCUgu-CGCGGu -3' miRNA: 3'- uGCG-GCCGGUU-----CCCGCGGgucGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 14132 | 0.66 | 0.22554 |
Target: 5'- uCGUCGGCCAGcGGCuuGCcuuccggccguuCCAGCGCGu -3' miRNA: 3'- uGCGGCCGGUUcCCG--CG------------GGUCGCGCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 34002 | 0.66 | 0.22554 |
Target: 5'- cACGCgCGGCCuacGaCGCCCaggaugaggucgAGCGCGGc -3' miRNA: 3'- -UGCG-GCCGGuucCcGCGGG------------UCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 35385 | 0.66 | 0.22554 |
Target: 5'- cGCGCuguccCGGCUGcgucAGGGCG-UCAGCGCGu -3' miRNA: 3'- -UGCG-----GCCGGU----UCCCGCgGGUCGCGCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 37408 | 0.66 | 0.22218 |
Target: 5'- aACcCUcGCCAAGGGCGUgagcagcgacggccgCCuGCGCGGc -3' miRNA: 3'- -UGcGGcCGGUUCCCGCG---------------GGuCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 17697 | 0.66 | 0.219963 |
Target: 5'- aGCGCCacucgGGCCGGGaaaUGCCCAuCGCGGc -3' miRNA: 3'- -UGCGG-----CCGGUUCcc-GCGGGUcGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 14230 | 0.66 | 0.219963 |
Target: 5'- cGCGCUgcccgacgaGGCCAAGGccaucgaguccGaCGCCgAGCGCGc -3' miRNA: 3'- -UGCGG---------CCGGUUCC-----------C-GCGGgUCGCGCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 5931 | 0.66 | 0.218314 |
Target: 5'- cCGCUGGCggCAucccagacguacacGGGGCcauuGUCCAGCGCGu -3' miRNA: 3'- uGCGGCCG--GU--------------UCCCG----CGGGUCGCGCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 34398 | 0.66 | 0.214505 |
Target: 5'- uCGCCGGCagcauccGGGCGCac-GCGCaGGg -3' miRNA: 3'- uGCGGCCGguu----CCCGCGgguCGCG-CC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 613 | 0.66 | 0.214505 |
Target: 5'- -gGUCGGCCAgcAGcgccguggacacGGCGUCCGGCGuCGa -3' miRNA: 3'- ugCGGCCGGU--UC------------CCGCGGGUCGC-GCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 21748 | 0.66 | 0.21289 |
Target: 5'- gGCG-CGGCCGcguccacauaggacAGGcCGCCCGGCaCGGu -3' miRNA: 3'- -UGCgGCCGGU--------------UCCcGCGGGUCGcGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 28636 | 0.66 | 0.209164 |
Target: 5'- -gGCCGGCCAguuccgcgcgcAGugccagaucGGUGCcggcggccucgCCAGCGCGGc -3' miRNA: 3'- ugCGGCCGGU-----------UC---------CCGCG-----------GGUCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 6741 | 0.66 | 0.209164 |
Target: 5'- gGCGUCGGCCuu-GGCGCCCcacuuuuccuuGGCGa-- -3' miRNA: 3'- -UGCGGCCGGuucCCGCGGG-----------UCGCgcc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 611 | 0.66 | 0.209164 |
Target: 5'- cAUGUCGGCgAugauGGCcucaGCCuCGGCGCGGg -3' miRNA: 3'- -UGCGGCCGgUuc--CCG----CGG-GUCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 15064 | 0.66 | 0.208636 |
Target: 5'- cGCGCCgagaagcuggcGGCCGAGGcCGCCgGcauccucGCGUGGu -3' miRNA: 3'- -UGCGG-----------CCGGUUCCcGCGGgU-------CGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 27502 | 0.66 | 0.208636 |
Target: 5'- cCGgCGGCCucGGcCGCCagcuucuCGGCGCGGu -3' miRNA: 3'- uGCgGCCGGuuCCcGCGG-------GUCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 24140 | 0.66 | 0.203937 |
Target: 5'- -aGCCGGCUgcGcGCcugGCCCAGCGCc- -3' miRNA: 3'- ugCGGCCGGuuCcCG---CGGGUCGCGcc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 34779 | 0.66 | 0.203937 |
Target: 5'- aGCGCCugcugggcGGCgAAGGGUGgacgCCGGCGCa- -3' miRNA: 3'- -UGCGG--------CCGgUUCCCGCg---GGUCGCGcc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 24422 | 0.66 | 0.198824 |
Target: 5'- -aGCCGGCCcgauuugucGGUGCCgC-GCGCGGc -3' miRNA: 3'- ugCGGCCGGuuc------CCGCGG-GuCGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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