miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26850 5' -55.8 NC_005809.1 + 29424 1.11 0.000454
Target:  5'- uGGCCGACAUCGAGGCGCAGUUGCAGAa -3'
miRNA:   3'- -CCGGCUGUAGCUCCGCGUCAACGUCU- -5'
26850 5' -55.8 NC_005809.1 + 23560 0.78 0.11146
Target:  5'- cGGCCGACAUCGccggcAGGUGCGG--GCGGGg -3'
miRNA:   3'- -CCGGCUGUAGC-----UCCGCGUCaaCGUCU- -5'
26850 5' -55.8 NC_005809.1 + 7817 0.77 0.139896
Target:  5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3'
miRNA:   3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5'
26850 5' -55.8 NC_005809.1 + 13311 0.75 0.184721
Target:  5'- gGGCCGGCGUUGuaggcGGCGUAGgcuuucgGCAGGu -3'
miRNA:   3'- -CCGGCUGUAGCu----CCGCGUCaa-----CGUCU- -5'
26850 5' -55.8 NC_005809.1 + 35336 0.75 0.189843
Target:  5'- cGGCCGACAUCGccgaggguGaGCGCGGc-GCAGAu -3'
miRNA:   3'- -CCGGCUGUAGCu-------C-CGCGUCaaCGUCU- -5'
26850 5' -55.8 NC_005809.1 + 4172 0.74 0.223252
Target:  5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3'
miRNA:   3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5'
26850 5' -55.8 NC_005809.1 + 37790 0.71 0.320652
Target:  5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3'
miRNA:   3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5'
26850 5' -55.8 NC_005809.1 + 11600 0.71 0.328708
Target:  5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3'
miRNA:   3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5'
26850 5' -55.8 NC_005809.1 + 27864 0.7 0.353768
Target:  5'- gGGCgcagGGCAUgGAGGCGCAacUGCAGGc -3'
miRNA:   3'- -CCGg---CUGUAgCUCCGCGUcaACGUCU- -5'
26850 5' -55.8 NC_005809.1 + 35324 0.7 0.353768
Target:  5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3'
miRNA:   3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5'
26850 5' -55.8 NC_005809.1 + 2436 0.7 0.362417
Target:  5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3'
miRNA:   3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5'
26850 5' -55.8 NC_005809.1 + 33391 0.7 0.37121
Target:  5'- aGGCCaACGUCGAcGGCGCcaAGUUGUc-- -3'
miRNA:   3'- -CCGGcUGUAGCU-CCGCG--UCAACGucu -5'
26850 5' -55.8 NC_005809.1 + 29044 0.69 0.41731
Target:  5'- cGGCCGACAguucGGCGCGGacgGCAa- -3'
miRNA:   3'- -CCGGCUGUagcuCCGCGUCaa-CGUcu -5'
26850 5' -55.8 NC_005809.1 + 24308 0.69 0.41731
Target:  5'- cGGCCGGCAaguUCucGGCGCAGgucgUgaccggcauccaGCAGAa -3'
miRNA:   3'- -CCGGCUGU---AGcuCCGCGUCa---A------------CGUCU- -5'
26850 5' -55.8 NC_005809.1 + 18903 0.69 0.436702
Target:  5'- cGGcCCGACcgaggGUCGccuGGUGCAGUUGCu-- -3'
miRNA:   3'- -CC-GGCUG-----UAGCu--CCGCGUCAACGucu -5'
26850 5' -55.8 NC_005809.1 + 39306 0.69 0.436702
Target:  5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3'
miRNA:   3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5'
26850 5' -55.8 NC_005809.1 + 10108 0.69 0.446591
Target:  5'- cGGCCGcccccaccucgGCAguagGGGGCGUAGggGCAGu -3'
miRNA:   3'- -CCGGC-----------UGUag--CUCCGCGUCaaCGUCu -5'
26850 5' -55.8 NC_005809.1 + 1329 0.68 0.456603
Target:  5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3'
miRNA:   3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5'
26850 5' -55.8 NC_005809.1 + 34399 0.68 0.476981
Target:  5'- cGCCGGCAgcaUCcGGGCGCAcgcGCAGGg -3'
miRNA:   3'- cCGGCUGU---AGcUCCGCGUcaaCGUCU- -5'
26850 5' -55.8 NC_005809.1 + 17022 0.68 0.476981
Target:  5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3'
miRNA:   3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.