Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26850 | 5' | -55.8 | NC_005809.1 | + | 829 | 0.66 | 0.617937 |
Target: 5'- uGCCGaACGUCGgccAGGUggGCAGguuggUGUAGAa -3' miRNA: 3'- cCGGC-UGUAGC---UCCG--CGUCa----ACGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 1329 | 0.68 | 0.456603 |
Target: 5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3' miRNA: 3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 2365 | 0.66 | 0.629114 |
Target: 5'- gGGCaaaCGGCAacgguUCGAGGCGCAcGgcaugGCGGu -3' miRNA: 3'- -CCG---GCUGU-----AGCUCCGCGU-Caa---CGUCu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 2436 | 0.7 | 0.362417 |
Target: 5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3' miRNA: 3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 2774 | 0.67 | 0.573453 |
Target: 5'- uGCCGACAccUCGAcguuGCGCAGgUGCGc- -3' miRNA: 3'- cCGGCUGU--AGCUc---CGCGUCaACGUcu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 4172 | 0.74 | 0.223252 |
Target: 5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3' miRNA: 3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 5251 | 0.66 | 0.629114 |
Target: 5'- cGGCCGGCAggUCGGGGUcgGCAa-UGCGu- -3' miRNA: 3'- -CCGGCUGU--AGCUCCG--CGUcaACGUcu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 5323 | 0.66 | 0.629114 |
Target: 5'- aGGCCGcgaGCA-CGuGGCGCAGcaugGCAu- -3' miRNA: 3'- -CCGGC---UGUaGCuCCGCGUCaa--CGUcu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 6371 | 0.67 | 0.519014 |
Target: 5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3' miRNA: 3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 7817 | 0.77 | 0.139896 |
Target: 5'- cGCUGAUaugGUCGAGGCGCGGcUGCAcGAu -3' miRNA: 3'- cCGGCUG---UAGCUCCGCGUCaACGU-CU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 8127 | 0.66 | 0.584522 |
Target: 5'- cGGCCGGCGUUGguuguGGGCGU----GCGGGu -3' miRNA: 3'- -CCGGCUGUAGC-----UCCGCGucaaCGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 10108 | 0.69 | 0.446591 |
Target: 5'- cGGCCGcccccaccucgGCAguagGGGGCGUAGggGCAGu -3' miRNA: 3'- -CCGGC-----------UGUag--CUCCGCGUCaaCGUCu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 10437 | 0.67 | 0.515808 |
Target: 5'- cGGCCuugagggauucgggGGCGUCGAGGUcgGCAGcgGcCAGGg -3' miRNA: 3'- -CCGG--------------CUGUAGCUCCG--CGUCaaC-GUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 11600 | 0.71 | 0.328708 |
Target: 5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3' miRNA: 3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 13311 | 0.75 | 0.184721 |
Target: 5'- gGGCCGGCGUUGuaggcGGCGUAGgcuuucgGCAGGu -3' miRNA: 3'- -CCGGCUGUAGCu----CCGCGUCaa-----CGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 16595 | 0.68 | 0.486297 |
Target: 5'- aGGCCGACcacgCGAugguguuGGCGCcgccGUUGguGAa -3' miRNA: 3'- -CCGGCUGua--GCU-------CCGCGu---CAACguCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 17022 | 0.68 | 0.476981 |
Target: 5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3' miRNA: 3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 17449 | 0.66 | 0.584522 |
Target: 5'- cGCCaGCAUCGAGGC-CAGgUGCc-- -3' miRNA: 3'- cCGGcUGUAGCUCCGcGUCaACGucu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 17793 | 0.66 | 0.584522 |
Target: 5'- cGCgGGCAUCGAGGaCGacccGUgGCAGGu -3' miRNA: 3'- cCGgCUGUAGCUCC-GCgu--CAaCGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 17837 | 0.66 | 0.584522 |
Target: 5'- gGGUCGagGCcgCGcAGGCGCGGUggaaGCGGc -3' miRNA: 3'- -CCGGC--UGuaGC-UCCGCGUCAa---CGUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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