miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26852 5' -56.5 NC_005809.1 + 23466 0.66 0.600513
Target:  5'- uACAcgcCGGCGUGGAacaGGUgcGCCGUg -3'
miRNA:   3'- -UGUcaaGCCGCGCCUg--CCGuuUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 27902 0.66 0.600513
Target:  5'- cCAGcaCGuCGCGGAUGGCAcccagcACCGUg -3'
miRNA:   3'- uGUCaaGCcGCGCCUGCCGUu-----UGGCG- -5'
26852 5' -56.5 NC_005809.1 + 28061 0.66 0.600513
Target:  5'- gACGGUcugcUCGaacaGCGGGCaGguGGCCGCg -3'
miRNA:   3'- -UGUCA----AGCcg--CGCCUGcCguUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 8570 0.66 0.600513
Target:  5'- gGCAGcgacaGGCGCGacacGACGGuCAcggcGACCGUg -3'
miRNA:   3'- -UGUCaag--CCGCGC----CUGCC-GU----UUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 22361 0.66 0.5939
Target:  5'- aACAGc-CGGcCGCGGGCgcugccaagaccgagGGCGAcgacaaggcgaaGCCGCa -3'
miRNA:   3'- -UGUCaaGCC-GCGCCUG---------------CCGUU------------UGGCG- -5'
26852 5' -56.5 NC_005809.1 + 5734 0.66 0.589497
Target:  5'- cACGGUUCGGCuaaGUuuguCGGCGAGuuGCu -3'
miRNA:   3'- -UGUCAAGCCG---CGccu-GCCGUUUggCG- -5'
26852 5' -56.5 NC_005809.1 + 16140 0.66 0.589497
Target:  5'- gUAGgacugCGGCcgcacgcugaugGUGGugGGCGuuACCGCg -3'
miRNA:   3'- uGUCaa---GCCG------------CGCCugCCGUu-UGGCG- -5'
26852 5' -56.5 NC_005809.1 + 19338 0.66 0.589497
Target:  5'- cCAGcgaGGCGCGGuCGGUggccgAGGCCGa -3'
miRNA:   3'- uGUCaagCCGCGCCuGCCG-----UUUGGCg -5'
26852 5' -56.5 NC_005809.1 + 16418 0.66 0.589497
Target:  5'- -----cCGcauCGCaGACGGCGAGCCGCu -3'
miRNA:   3'- ugucaaGCc--GCGcCUGCCGUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 21445 0.66 0.588397
Target:  5'- uGCAuuuccugCGGCGgGGGCGGCAggauguuggccucGACCauGCg -3'
miRNA:   3'- -UGUcaa----GCCGCgCCUGCCGU-------------UUGG--CG- -5'
26852 5' -56.5 NC_005809.1 + 41877 0.66 0.578518
Target:  5'- gGCGGUaucuugggCGGCcCGGcCGGC--GCCGCc -3'
miRNA:   3'- -UGUCAa-------GCCGcGCCuGCCGuuUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 18064 0.66 0.578518
Target:  5'- -----cCGGCGCGGgguGCGuGCuGGGCCGCc -3'
miRNA:   3'- ugucaaGCCGCGCC---UGC-CG-UUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 30148 0.66 0.578518
Target:  5'- gACA--UCGacaGCGCcaccaaGGACGGCAucaaGGCCGCa -3'
miRNA:   3'- -UGUcaAGC---CGCG------CCUGCCGU----UUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 34858 0.66 0.578518
Target:  5'- aGCGGUgcaggCGGUGUGGGaucacuucgagGGCuaccGGCCGCa -3'
miRNA:   3'- -UGUCAa----GCCGCGCCUg----------CCGu---UUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 15296 0.66 0.578518
Target:  5'- ------aGGCGC--GCGGCGAACUGCg -3'
miRNA:   3'- ugucaagCCGCGccUGCCGUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 14762 0.66 0.578518
Target:  5'- gGCAGcgCGcGCGaGGACGuGCugcGGCUGCg -3'
miRNA:   3'- -UGUCaaGC-CGCgCCUGC-CGu--UUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 18504 0.66 0.578518
Target:  5'- cGCGG-UCGccgcuacuguGCGCGGcAUGG-AAACCGCa -3'
miRNA:   3'- -UGUCaAGC----------CGCGCC-UGCCgUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 17890 0.66 0.567584
Target:  5'- gACAGccUgGGCGUGGACguGGC---CCGCg -3'
miRNA:   3'- -UGUCa-AgCCGCGCCUG--CCGuuuGGCG- -5'
26852 5' -56.5 NC_005809.1 + 34785 0.66 0.567584
Target:  5'- uGCuGggCGGCgaaggGUGGACGccggcGCAGAUCGCg -3'
miRNA:   3'- -UGuCaaGCCG-----CGCCUGC-----CGUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 27641 0.66 0.567584
Target:  5'- -gAGUUgGGCGCGcaguCGGCAcuugaGGCCGg -3'
miRNA:   3'- ugUCAAgCCGCGCcu--GCCGU-----UUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.