Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26853 | 3' | -53.6 | NC_005809.1 | + | 2421 | 0.66 | 0.728806 |
Target: 5'- gACUGGAACcACCUCGauuugaagGCGCCGa---- -3' miRNA: 3'- -UGACCUUGuUGGGGC--------UGCGGUaguua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 4378 | 0.66 | 0.717718 |
Target: 5'- --cGGAugcGCAGCCa-GGCGCCGUCGc- -3' miRNA: 3'- ugaCCU---UGUUGGggCUGCGGUAGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 6374 | 0.67 | 0.626766 |
Target: 5'- cGCUGGGuuACAccaggucggccGCCgCGGCGCCcUCGGUg -3' miRNA: 3'- -UGACCU--UGU-----------UGGgGCUGCGGuAGUUA- -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 9169 | 0.66 | 0.706539 |
Target: 5'- gGCcGGcAGCGACaaCuuGGCGCCGUCGAc -3' miRNA: 3'- -UGaCC-UUGUUG--GggCUGCGGUAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 11826 | 0.66 | 0.728806 |
Target: 5'- gACUGGAACAGaCCggCCG-CGCCG-CGGUu -3' miRNA: 3'- -UGACCUUGUU-GG--GGCuGCGGUaGUUA- -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 11857 | 0.66 | 0.728806 |
Target: 5'- cCUGGGcgAACCCCG-CGCCAauaUCGc- -3' miRNA: 3'- uGACCUugUUGGGGCuGCGGU---AGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 12480 | 0.69 | 0.513971 |
Target: 5'- cCUGGGACAagggccguggcGCCCgGGCGCCG-CAc- -3' miRNA: 3'- uGACCUUGU-----------UGGGgCUGCGGUaGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 13212 | 0.71 | 0.43003 |
Target: 5'- gGCUGGGGCAagGCCaCCGGCGCgugguUCGAg -3' miRNA: 3'- -UGACCUUGU--UGG-GGCUGCGgu---AGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 13728 | 0.69 | 0.546058 |
Target: 5'- cGCUGGGACAGCUUCGGCaaguccgGCCG-CAAc -3' miRNA: 3'- -UGACCUUGUUGGGGCUG-------CGGUaGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 16524 | 0.66 | 0.680546 |
Target: 5'- cGCaUGGAGCGcgcccgccgcgcggGCUuuGAUGCCAUCGc- -3' miRNA: 3'- -UG-ACCUUGU--------------UGGggCUGCGGUAGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 17006 | 0.68 | 0.5584 |
Target: 5'- --cGGcguACAACUCCGACGCCGacaUCAu- -3' miRNA: 3'- ugaCCu--UGUUGGGGCUGCGGU---AGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 17636 | 0.68 | 0.592421 |
Target: 5'- --cGGAcuACAACCCCGAgGaCAUCAu- -3' miRNA: 3'- ugaCCU--UGUUGGGGCUgCgGUAGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 18454 | 0.67 | 0.615298 |
Target: 5'- gGCUGGAcuACGACCCCuACGCgCG-CAu- -3' miRNA: 3'- -UGACCU--UGUUGGGGcUGCG-GUaGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 19040 | 0.75 | 0.253253 |
Target: 5'- cCUGGuAGCGGCCgCCGGCGgCGUCGAUc -3' miRNA: 3'- uGACC-UUGUUGG-GGCUGCgGUAGUUA- -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 19845 | 0.68 | 0.569688 |
Target: 5'- uGCUGGGGCAAUaaCGugGCCGagCAAa -3' miRNA: 3'- -UGACCUUGUUGggGCugCGGUa-GUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 20136 | 0.73 | 0.304607 |
Target: 5'- aACUGG-ACGAgUCCGcCGCCGUCAAg -3' miRNA: 3'- -UGACCuUGUUgGGGCuGCGGUAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 21323 | 0.68 | 0.569688 |
Target: 5'- uGCUGGGcauCGACCCCGAguugaucgUGCCGggCAAUc -3' miRNA: 3'- -UGACCUu--GUUGGGGCU--------GCGGUa-GUUA- -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 24184 | 0.66 | 0.717718 |
Target: 5'- -gUGGcc--GCCaCCGGCGCCAUCGGc -3' miRNA: 3'- ugACCuuguUGG-GGCUGCGGUAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 24912 | 0.66 | 0.69528 |
Target: 5'- ------cCAGCCcgCCGACGCCAUCAAg -3' miRNA: 3'- ugaccuuGUUGG--GGCUGCGGUAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 26944 | 0.67 | 0.63824 |
Target: 5'- gGCUGGAGC-ACCUCGAagggaaaaCCGUCAGc -3' miRNA: 3'- -UGACCUUGuUGGGGCUgc------GGUAGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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