Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26853 | 3' | -53.6 | NC_005809.1 | + | 19040 | 0.75 | 0.253253 |
Target: 5'- cCUGGuAGCGGCCgCCGGCGgCGUCGAUc -3' miRNA: 3'- uGACC-UUGUUGG-GGCUGCgGUAGUUA- -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 29983 | 0.66 | 0.728806 |
Target: 5'- cCUGGAuGCAGCCgUCGAacggGCCAUCGu- -3' miRNA: 3'- uGACCU-UGUUGG-GGCUg---CGGUAGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 11857 | 0.66 | 0.728806 |
Target: 5'- cCUGGGcgAACCCCG-CGCCAauaUCGc- -3' miRNA: 3'- uGACCUugUUGGGGCuGCGGU---AGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 11826 | 0.66 | 0.728806 |
Target: 5'- gACUGGAACAGaCCggCCG-CGCCG-CGGUu -3' miRNA: 3'- -UGACCUUGUU-GG--GGCuGCGGUaGUUA- -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 9169 | 0.66 | 0.706539 |
Target: 5'- gGCcGGcAGCGACaaCuuGGCGCCGUCGAc -3' miRNA: 3'- -UGaCC-UUGUUG--GggCUGCGGUAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 40132 | 0.66 | 0.672576 |
Target: 5'- cCUGGGccGCAGuuUCGGCGCCuUCAAa -3' miRNA: 3'- uGACCU--UGUUggGGCUGCGGuAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 38747 | 0.68 | 0.603846 |
Target: 5'- cGCUGGAuuggucgcaacgGCGcCCCCGAcCGCCugGUCAu- -3' miRNA: 3'- -UGACCU------------UGUuGGGGCU-GCGG--UAGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 36280 | 0.68 | 0.603846 |
Target: 5'- cACcGGAGauaAGCCCCGGCGCCc-CAGc -3' miRNA: 3'- -UGaCCUUg--UUGGGGCUGCGGuaGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 32969 | 0.69 | 0.547177 |
Target: 5'- uACUGGcaaGACCCgGACGCCAa---- -3' miRNA: 3'- -UGACCuugUUGGGgCUGCGGUaguua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 37308 | 0.7 | 0.440092 |
Target: 5'- cGCUGGAACGacgcauugccgACCCCGACcuGCCGgcCGAa -3' miRNA: 3'- -UGACCUUGU-----------UGGGGCUG--CGGUa-GUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 28828 | 0.69 | 0.524954 |
Target: 5'- cGCUGGAACAAaacaaCCCGACcuauGCC-UCGGc -3' miRNA: 3'- -UGACCUUGUUg----GGGCUG----CGGuAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 41973 | 0.69 | 0.513971 |
Target: 5'- uGCUGGc-CGACCCgcaGGCGgCCAUCAAa -3' miRNA: 3'- -UGACCuuGUUGGGg--CUGC-GGUAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 12480 | 0.69 | 0.513971 |
Target: 5'- cCUGGGACAagggccguggcGCCCgGGCGCCG-CAc- -3' miRNA: 3'- uGACCUUGU-----------UGGGgCUGCGGUaGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 38280 | 0.69 | 0.503084 |
Target: 5'- aGCUGGuGCAguucACCgCCGACacgGCCAUCAc- -3' miRNA: 3'- -UGACCuUGU----UGG-GGCUG---CGGUAGUua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 33631 | 0.7 | 0.481618 |
Target: 5'- uGCUGGAACAguucgGCgaacuguccacgCCCGAaGCCAUCGAg -3' miRNA: 3'- -UGACCUUGU-----UG------------GGGCUgCGGUAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 33340 | 0.7 | 0.471053 |
Target: 5'- aACUGGAACuGCCgCCGggcGCGCCG-CAGa -3' miRNA: 3'- -UGACCUUGuUGG-GGC---UGCGGUaGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 13212 | 0.71 | 0.43003 |
Target: 5'- gGCUGGGGCAagGCCaCCGGCGCgugguUCGAg -3' miRNA: 3'- -UGACCUUGU--UGG-GGCUGCGgu---AGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 40512 | 0.72 | 0.345959 |
Target: 5'- uGCUGGGcgACGACCCCGaggaauugcGCGCCGUg--- -3' miRNA: 3'- -UGACCU--UGUUGGGGC---------UGCGGUAguua -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 20136 | 0.73 | 0.304607 |
Target: 5'- aACUGG-ACGAgUCCGcCGCCGUCAAg -3' miRNA: 3'- -UGACCuUGUUgGGGCuGCGGUAGUUa -5' |
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26853 | 3' | -53.6 | NC_005809.1 | + | 37274 | 0.66 | 0.728806 |
Target: 5'- cCUGGAAaauauCGACgCCGugGCCGaCAAc -3' miRNA: 3'- uGACCUU-----GUUGgGGCugCGGUaGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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