Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26853 | 5' | -47.9 | NC_005809.1 | + | 28708 | 1.15 | 0.002081 |
Target: 5'- uCGAUCGCAUAAAGGCCGAAACCUUCCg -3' miRNA: 3'- -GCUAGCGUAUUUCCGGCUUUGGAAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 35129 | 0.77 | 0.465902 |
Target: 5'- --uUCGCGcGAAGGCCGAAGCCgaacugcuggCCg -3' miRNA: 3'- gcuAGCGUaUUUCCGGCUUUGGaa--------GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 29491 | 0.77 | 0.49849 |
Target: 5'- uGcgCGCGUGGAGGCCGAGcGCCaaUUCa -3' miRNA: 3'- gCuaGCGUAUUUCCGGCUU-UGG--AAGg -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 33925 | 0.76 | 0.543429 |
Target: 5'- cCGAcCGCcgAUGAAGGCCGGcGACCUcgCCa -3' miRNA: 3'- -GCUaGCG--UAUUUCCGGCU-UUGGAa-GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 19341 | 0.73 | 0.683192 |
Target: 5'- gCGAggCGCGgucgguGGCCGAGGCCgaggCCg -3' miRNA: 3'- -GCUa-GCGUauuu--CCGGCUUUGGaa--GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 7136 | 0.73 | 0.706286 |
Target: 5'- gCGGUUGCAUAAGGGCgcucaugacguUGAAGCCcaggCCc -3' miRNA: 3'- -GCUAGCGUAUUUCCG-----------GCUUUGGaa--GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 19401 | 0.73 | 0.706286 |
Target: 5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3' miRNA: 3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 41526 | 0.72 | 0.773147 |
Target: 5'- cCGGuUCGCGgcGAcaugcugccgccGGCCGugGCCUUCCa -3' miRNA: 3'- -GCU-AGCGUauUU------------CCGGCuuUGGAAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 34128 | 0.71 | 0.804533 |
Target: 5'- uCGAUCuGCGcAAGGGCCaAAGCCUcaaggCCg -3' miRNA: 3'- -GCUAG-CGUaUUUCCGGcUUUGGAa----GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 28622 | 0.71 | 0.814602 |
Target: 5'- cCGggCGCGgauGAGGCCG--GCCagUUCCg -3' miRNA: 3'- -GCuaGCGUau-UUCCGGCuuUGG--AAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 9642 | 0.7 | 0.824453 |
Target: 5'- uGGUCGCccu--GGCCGAAcaGCCagCCg -3' miRNA: 3'- gCUAGCGuauuuCCGGCUU--UGGaaGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 10794 | 0.7 | 0.858818 |
Target: 5'- gGAUUGCAUGuacuGcugcgccucggcgcGGCUGAAuCCUUCCg -3' miRNA: 3'- gCUAGCGUAUu---U--------------CCGGCUUuGGAAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 15456 | 0.69 | 0.878358 |
Target: 5'- uGA-CGCGcccuuGGCCGAAGCUgccgUCCa -3' miRNA: 3'- gCUaGCGUauuu-CCGGCUUUGGa---AGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 41214 | 0.69 | 0.901543 |
Target: 5'- uCGGUCGCcgGAugcgcaAGGCCGccGACCacggcUUCCu -3' miRNA: 3'- -GCUAGCGuaUU------UCCGGCu-UUGG-----AAGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 24116 | 0.68 | 0.908667 |
Target: 5'- aUGcgCGCGUAGGGGUCGuaguCCagCCg -3' miRNA: 3'- -GCuaGCGUAUUUCCGGCuuu-GGaaGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 4659 | 0.68 | 0.915482 |
Target: 5'- -cAUCGCGUcAAGGUCGAuGCCguagguagCCg -3' miRNA: 3'- gcUAGCGUAuUUCCGGCUuUGGaa------GG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 33034 | 0.68 | 0.915482 |
Target: 5'- aGAUCGCAcu--GGCCGAAcaggGCCg--- -3' miRNA: 3'- gCUAGCGUauuuCCGGCUU----UGGaagg -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 20318 | 0.68 | 0.921983 |
Target: 5'- cCGGUUGCgAUGcGGGCUG--GCCUUCa -3' miRNA: 3'- -GCUAGCG-UAUuUCCGGCuuUGGAAGg -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 32363 | 0.68 | 0.921983 |
Target: 5'- gCGGUCGCcgccGAGGCCccGGCCgcCCa -3' miRNA: 3'- -GCUAGCGuau-UUCCGGcuUUGGaaGG- -5' |
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26853 | 5' | -47.9 | NC_005809.1 | + | 8610 | 0.68 | 0.921983 |
Target: 5'- gGAUgGCGUAGgcguGGCCGGuacgcCCUUCg -3' miRNA: 3'- gCUAgCGUAUUu---CCGGCUuu---GGAAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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