miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26853 5' -47.9 NC_005809.1 + 1569 0.67 0.944857
Target:  5'- gGAUgGgCAUAuccuuguaguGGCCGccGCCUUCCu -3'
miRNA:   3'- gCUAgC-GUAUuu--------CCGGCuuUGGAAGG- -5'
26853 5' -47.9 NC_005809.1 + 4368 0.67 0.944857
Target:  5'- cCGGUgCGCGUGAAggcgacGGCCGAcuugucGGCCUUg- -3'
miRNA:   3'- -GCUA-GCGUAUUU------CCGGCU------UUGGAAgg -5'
26853 5' -47.9 NC_005809.1 + 4659 0.68 0.915482
Target:  5'- -cAUCGCGUcAAGGUCGAuGCCguagguagCCg -3'
miRNA:   3'- gcUAGCGUAuUUCCGGCUuUGGaa------GG- -5'
26853 5' -47.9 NC_005809.1 + 4813 0.67 0.944857
Target:  5'- ----aGCuuGUAGAGGUCGggGCCggcgCCg -3'
miRNA:   3'- gcuagCG--UAUUUCCGGCuuUGGaa--GG- -5'
26853 5' -47.9 NC_005809.1 + 5290 0.68 0.934046
Target:  5'- uCGAUugcUGCAUGucuggcAGGUCGAGGCCguaggCCg -3'
miRNA:   3'- -GCUA---GCGUAUu-----UCCGGCUUUGGaa---GG- -5'
26853 5' -47.9 NC_005809.1 + 7136 0.73 0.706286
Target:  5'- gCGGUUGCAUAAGGGCgcucaugacguUGAAGCCcaggCCc -3'
miRNA:   3'- -GCUAGCGUAUUUCCG-----------GCUUUGGaa--GG- -5'
26853 5' -47.9 NC_005809.1 + 8610 0.68 0.921983
Target:  5'- gGAUgGCGUAGgcguGGCCGGuacgcCCUUCg -3'
miRNA:   3'- gCUAgCGUAUUu---CCGGCUuu---GGAAGg -5'
26853 5' -47.9 NC_005809.1 + 9642 0.7 0.824453
Target:  5'- uGGUCGCccu--GGCCGAAcaGCCagCCg -3'
miRNA:   3'- gCUAGCGuauuuCCGGCUU--UGGaaGG- -5'
26853 5' -47.9 NC_005809.1 + 10794 0.7 0.858818
Target:  5'- gGAUUGCAUGuacuGcugcgccucggcgcGGCUGAAuCCUUCCg -3'
miRNA:   3'- gCUAGCGUAUu---U--------------CCGGCUUuGGAAGG- -5'
26853 5' -47.9 NC_005809.1 + 13294 0.67 0.939607
Target:  5'- cCGAUUGCAgcgc-GCCGggGCCggCg -3'
miRNA:   3'- -GCUAGCGUauuucCGGCuuUGGaaGg -5'
26853 5' -47.9 NC_005809.1 + 15059 0.66 0.966583
Target:  5'- cCGAcCGCGccgagaagcUGgcGGCCGAGGCCg-CCg -3'
miRNA:   3'- -GCUaGCGU---------AUuuCCGGCUUUGGaaGG- -5'
26853 5' -47.9 NC_005809.1 + 15456 0.69 0.878358
Target:  5'- uGA-CGCGcccuuGGCCGAAGCUgccgUCCa -3'
miRNA:   3'- gCUaGCGUauuu-CCGGCUUUGGa---AGG- -5'
26853 5' -47.9 NC_005809.1 + 19091 0.66 0.970067
Target:  5'- gCGAUUGCAggccGGCCugcGAAcCCUUCg -3'
miRNA:   3'- -GCUAGCGUauuuCCGG---CUUuGGAAGg -5'
26853 5' -47.9 NC_005809.1 + 19341 0.73 0.683192
Target:  5'- gCGAggCGCGgucgguGGCCGAGGCCgaggCCg -3'
miRNA:   3'- -GCUa-GCGUauuu--CCGGCUUUGGaa--GG- -5'
26853 5' -47.9 NC_005809.1 + 19401 0.73 0.706286
Target:  5'- -uGUCGCAccagcaGGGGGCCGAAACCaUCa -3'
miRNA:   3'- gcUAGCGUa-----UUUCCGGCUUUGGaAGg -5'
26853 5' -47.9 NC_005809.1 + 20318 0.68 0.921983
Target:  5'- cCGGUUGCgAUGcGGGCUG--GCCUUCa -3'
miRNA:   3'- -GCUAGCG-UAUuUCCGGCuuUGGAAGg -5'
26853 5' -47.9 NC_005809.1 + 23713 0.67 0.958775
Target:  5'- cCGAaCGUGggcauGGGCCGcccGGCCUUCUa -3'
miRNA:   3'- -GCUaGCGUauu--UCCGGCu--UUGGAAGG- -5'
26853 5' -47.9 NC_005809.1 + 24116 0.68 0.908667
Target:  5'- aUGcgCGCGUAGGGGUCGuaguCCagCCg -3'
miRNA:   3'- -GCuaGCGUAUUUCCGGCuuu-GGaaGG- -5'
26853 5' -47.9 NC_005809.1 + 24566 0.67 0.939607
Target:  5'- gCGAUgGCG---AGGCCGGccacggucgGGCCgUCCg -3'
miRNA:   3'- -GCUAgCGUauuUCCGGCU---------UUGGaAGG- -5'
26853 5' -47.9 NC_005809.1 + 28622 0.71 0.814602
Target:  5'- cCGggCGCGgauGAGGCCG--GCCagUUCCg -3'
miRNA:   3'- -GCuaGCGUau-UUCCGGCuuUGG--AAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.