miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2686 3' -61.9 NC_001491.2 + 52869 1.06 0.001271
Target:  5'- gUCUGCGCGGCGCUGGCAACGCGCGCg -3'
miRNA:   3'- -AGACGCGCCGCGACCGUUGCGCGCGg -5'
2686 3' -61.9 NC_001491.2 + 26874 0.76 0.16616
Target:  5'- aUCUGCG-GGCGCgagcaGGCgAACGCGUGUCc -3'
miRNA:   3'- -AGACGCgCCGCGa----CCG-UUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 2434 0.76 0.18182
Target:  5'- cUCaGCG-GGcCGCUGGCcgccagcuccccgaAGCGCGCGCCg -3'
miRNA:   3'- -AGaCGCgCC-GCGACCG--------------UUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 35278 0.75 0.192202
Target:  5'- cCUGCGcCGuGCGCUGGCccCGggaGCGCCa -3'
miRNA:   3'- aGACGC-GC-CGCGACCGuuGCg--CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 5756 0.74 0.221754
Target:  5'- --gGCG-GGCGCUcGGaCGACGgGCGCCg -3'
miRNA:   3'- agaCGCgCCGCGA-CC-GUUGCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 92254 0.74 0.22704
Target:  5'- cCUGCGauaGGCGCUGGCcAUGC-CgGCCa -3'
miRNA:   3'- aGACGCg--CCGCGACCGuUGCGcG-CGG- -5'
2686 3' -61.9 NC_001491.2 + 5634 0.74 0.232433
Target:  5'- gCUGCGCuG-GCUGGcCAugGCGUGCUa -3'
miRNA:   3'- aGACGCGcCgCGACC-GUugCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 35668 0.74 0.232433
Target:  5'- --gGCGCGGCGCUGGgGcCGUGgaGCCc -3'
miRNA:   3'- agaCGCGCCGCGACCgUuGCGCg-CGG- -5'
2686 3' -61.9 NC_001491.2 + 24633 0.73 0.25745
Target:  5'- gCUGcCGCGGCgGCggccgucggaggggGGgGAUGCGCGCCc -3'
miRNA:   3'- aGAC-GCGCCG-CGa-------------CCgUUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 13606 0.73 0.273245
Target:  5'- aCUGcCGCcGgGCaGGCAAUGUGCGCCc -3'
miRNA:   3'- aGAC-GCGcCgCGaCCGUUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 99071 0.73 0.273245
Target:  5'- gUCUGCGCGaUGgaGGCGAgGCuCGCCg -3'
miRNA:   3'- -AGACGCGCcGCgaCCGUUgCGcGCGG- -5'
2686 3' -61.9 NC_001491.2 + 27994 0.73 0.292424
Target:  5'- --cGCuuGCGGCGCuuuuUGGCAGCGCuaGCGCg -3'
miRNA:   3'- agaCG--CGCCGCG----ACCGUUGCG--CGCGg -5'
2686 3' -61.9 NC_001491.2 + 136297 0.72 0.299046
Target:  5'- --cGCGcCGGgGCUGGCGGCcuugggcggugGCaGCGCCa -3'
miRNA:   3'- agaCGC-GCCgCGACCGUUG-----------CG-CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 10099 0.72 0.312639
Target:  5'- --cGUGuCGGCGgaGGCAGCGgaCGCGCUc -3'
miRNA:   3'- agaCGC-GCCGCgaCCGUUGC--GCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 148692 0.72 0.326694
Target:  5'- -aUGCGCGGCGCccccauugGGCGGCgGUGgGCa -3'
miRNA:   3'- agACGCGCCGCGa-------CCGUUG-CGCgCGg -5'
2686 3' -61.9 NC_001491.2 + 34754 0.72 0.326694
Target:  5'- gCUGCaGCGGCcccccgGCccgGGaCGGCGCGCGCUu -3'
miRNA:   3'- aGACG-CGCCG------CGa--CC-GUUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 43356 0.72 0.331001
Target:  5'- cCUGCGCGuGaCGCUGGCuaaauucaccauuGCGUGCaCCa -3'
miRNA:   3'- aGACGCGC-C-GCGACCGu------------UGCGCGcGG- -5'
2686 3' -61.9 NC_001491.2 + 134720 0.71 0.341213
Target:  5'- aUCUGCGagguGGCGUaucgGaGCuccgccGCGCGCGCCg -3'
miRNA:   3'- -AGACGCg---CCGCGa---C-CGu-----UGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 115730 0.71 0.356192
Target:  5'- aCUG-GC-GUGCUcGGCcACGCGCGCCc -3'
miRNA:   3'- aGACgCGcCGCGA-CCGuUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 110697 0.71 0.379515
Target:  5'- --cGgGCGGCGCUaauuucGGCGgcACGCugucGCGCCg -3'
miRNA:   3'- agaCgCGCCGCGA------CCGU--UGCG----CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.