miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2686 3' -61.9 NC_001491.2 + 1432 0.66 0.636288
Target:  5'- gUCgaccCGCGGgGCUcGGCGGCGgGgaGCCu -3'
miRNA:   3'- -AGac--GCGCCgCGA-CCGUUGCgCg-CGG- -5'
2686 3' -61.9 NC_001491.2 + 1642 0.67 0.606705
Target:  5'- --cGCGCGGU---GGCucuGCGCgGCGCCc -3'
miRNA:   3'- agaCGCGCCGcgaCCGu--UGCG-CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 1962 0.68 0.519558
Target:  5'- --aGCGCacGGCGCaGGCGACccgcggagucaGgGCGCCc -3'
miRNA:   3'- agaCGCG--CCGCGaCCGUUG-----------CgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 2434 0.76 0.18182
Target:  5'- cUCaGCG-GGcCGCUGGCcgccagcuccccgaAGCGCGCGCCg -3'
miRNA:   3'- -AGaCGCgCC-GCGACCG--------------UUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 4272 0.68 0.519558
Target:  5'- cCUGCGCcucGGCGUaGcGCGAgGCG-GCCa -3'
miRNA:   3'- aGACGCG---CCGCGaC-CGUUgCGCgCGG- -5'
2686 3' -61.9 NC_001491.2 + 4792 0.67 0.557835
Target:  5'- --cGgGCGGC--UGGgAGCGgGCGCCg -3'
miRNA:   3'- agaCgCGCCGcgACCgUUGCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 5520 0.67 0.586081
Target:  5'- gUCggGCGCGGCggGCUGGgugaaccccucuuCGGC-CGCGCUg -3'
miRNA:   3'- -AGa-CGCGCCG--CGACC-------------GUUGcGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 5634 0.74 0.232433
Target:  5'- gCUGCGCuG-GCUGGcCAugGCGUGCUa -3'
miRNA:   3'- aGACGCGcCgCGACC-GUugCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 5756 0.74 0.221754
Target:  5'- --gGCG-GGCGCUcGGaCGACGgGCGCCg -3'
miRNA:   3'- agaCGCgCCGCGA-CC-GUUGCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 7670 0.68 0.500806
Target:  5'- -gUGUGCGGCuaUGGgGGgGgGCGCUa -3'
miRNA:   3'- agACGCGCCGcgACCgUUgCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 10099 0.72 0.312639
Target:  5'- --cGUGuCGGCGgaGGCAGCGgaCGCGCUc -3'
miRNA:   3'- agaCGC-GCCGCgaCCGUUGC--GCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 10147 0.66 0.636288
Target:  5'- --cGCGgaGGC-CUGGCcGCGCGUGUa -3'
miRNA:   3'- agaCGCg-CCGcGACCGuUGCGCGCGg -5'
2686 3' -61.9 NC_001491.2 + 10274 0.68 0.510146
Target:  5'- cUCgGCGCGGCGCcGGUggaGACcCaCGCCg -3'
miRNA:   3'- -AGaCGCGCCGCGaCCG---UUGcGcGCGG- -5'
2686 3' -61.9 NC_001491.2 + 12479 0.68 0.500806
Target:  5'- --cGCcCGGCG--GGCGGCGgGCGCCc -3'
miRNA:   3'- agaCGcGCCGCgaCCGUUGCgCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 12548 0.68 0.548181
Target:  5'- --aGCG-GGCGC-GGgAGCGCgcgaGCGCCg -3'
miRNA:   3'- agaCGCgCCGCGaCCgUUGCG----CGCGG- -5'
2686 3' -61.9 NC_001491.2 + 13606 0.73 0.273245
Target:  5'- aCUGcCGCcGgGCaGGCAAUGUGCGCCc -3'
miRNA:   3'- aGAC-GCGcCgCGaCCGUUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 24633 0.73 0.25745
Target:  5'- gCUGcCGCGGCgGCggccgucggaggggGGgGAUGCGCGCCc -3'
miRNA:   3'- aGAC-GCGCCG-CGa-------------CCgUUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 26736 0.7 0.386709
Target:  5'- gCUGCGUGGCGggGGaacagcucgggcuCGGCGCcCGCCa -3'
miRNA:   3'- aGACGCGCCGCgaCC-------------GUUGCGcGCGG- -5'
2686 3' -61.9 NC_001491.2 + 26874 0.76 0.16616
Target:  5'- aUCUGCG-GGCGCgagcaGGCgAACGCGUGUCc -3'
miRNA:   3'- -AGACGCgCCGCGa----CCG-UUGCGCGCGG- -5'
2686 3' -61.9 NC_001491.2 + 27087 0.68 0.510146
Target:  5'- --cGCGCGGCcaggccuccGCgGGCGGCcCGgCGCCg -3'
miRNA:   3'- agaCGCGCCG---------CGaCCGUUGcGC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.