Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26865 | 5' | -61.6 | NC_005809.1 | + | 25761 | 1.08 | 0.000187 |
Target: 5'- gUGAACUGCGCCGCCUGGGCGCGACCAa -3' miRNA: 3'- -ACUUGACGCGGCGGACCCGCGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 12977 | 0.8 | 0.029165 |
Target: 5'- gGAcaACUGgcaaacCGCgCGCCUGGGCGCGGCCGa -3' miRNA: 3'- aCU--UGAC------GCG-GCGGACCCGCGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 33337 | 0.76 | 0.058247 |
Target: 5'- gUGAACUGgaacUGCCGCC-GGGCGCG-CCGc -3' miRNA: 3'- -ACUUGAC----GCGGCGGaCCCGCGCuGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 29824 | 0.75 | 0.065287 |
Target: 5'- gGAGC-GCGCCaagcGUCUGGGCGCGGCa- -3' miRNA: 3'- aCUUGaCGCGG----CGGACCCGCGCUGgu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 15140 | 0.75 | 0.071098 |
Target: 5'- aGGGcCUGCgGCCGCC-GGGCGCGgugcGCCAg -3' miRNA: 3'- aCUU-GACG-CGGCGGaCCCGCGC----UGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 14381 | 0.75 | 0.077405 |
Target: 5'- cUGGACaagGCGCCGCaccugCUGGGCGUGGgCAa -3' miRNA: 3'- -ACUUGa--CGCGGCG-----GACCCGCGCUgGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 18077 | 0.73 | 0.108382 |
Target: 5'- cGuGCUGgGCCGCCgaagccGGCGCGaACCAg -3' miRNA: 3'- aCuUGACgCGGCGGac----CCGCGC-UGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 2736 | 0.72 | 0.114567 |
Target: 5'- uUGAGCgcggcccgGCGCUGCUcGGGCGUgccGACCAc -3' miRNA: 3'- -ACUUGa-------CGCGGCGGaCCCGCG---CUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 19045 | 0.72 | 0.117781 |
Target: 5'- cGAccGCgUGCGCCGCCUGgaaGGCGCGcucgcggaacuGCCGc -3' miRNA: 3'- aCU--UG-ACGCGGCGGAC---CCGCGC-----------UGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 8679 | 0.71 | 0.138892 |
Target: 5'- cGGcuGCUGCGCCGCCcaGGuGUGCG-CCGc -3' miRNA: 3'- aCU--UGACGCGGCGGa-CC-CGCGCuGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 38862 | 0.71 | 0.150705 |
Target: 5'- aUGAGCggaUGCGCCGCaugGGGCaGCGcgucGCCGu -3' miRNA: 3'- -ACUUG---ACGCGGCGga-CCCG-CGC----UGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 33560 | 0.7 | 0.156525 |
Target: 5'- cGAACuggUGCGCCGCCUGcuggaagcgcccccGCGCGGCgAg -3' miRNA: 3'- aCUUG---ACGCGGCGGACc-------------CGCGCUGgU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 28812 | 0.7 | 0.167874 |
Target: 5'- uUGAGCagccagcGCGCCGUCgucGGGuUGCGGCCGg -3' miRNA: 3'- -ACUUGa------CGCGGCGGa--CCC-GCGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 20134 | 0.7 | 0.1771 |
Target: 5'- cGAACUGgacgagucCGCCGCCgucaaGGCGUGGCUg -3' miRNA: 3'- aCUUGAC--------GCGGCGGac---CCGCGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 7025 | 0.7 | 0.1771 |
Target: 5'- aUGGGCguuUGUGCCGCCUGuugcagcaGGCGCauGGCCu -3' miRNA: 3'- -ACUUG---ACGCGGCGGAC--------CCGCG--CUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 21171 | 0.69 | 0.18188 |
Target: 5'- -cAACaGCGCgGCCUGcuGCGCGGCCu -3' miRNA: 3'- acUUGaCGCGgCGGACc-CGCGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 16142 | 0.69 | 0.194846 |
Target: 5'- aGGACUGCgGCCGCacgcugaugguggUGGGCGUuACCGc -3' miRNA: 3'- aCUUGACG-CGGCGg------------ACCCGCGcUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 32908 | 0.68 | 0.215246 |
Target: 5'- aGAACUGCgGCCacgGCCUGcacGGCugcuguucggccaggGCGACCAc -3' miRNA: 3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 34168 | 0.68 | 0.218063 |
Target: 5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3' miRNA: 3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 41263 | 0.68 | 0.21863 |
Target: 5'- cGGcCUGguggcCGUCGcCCUGGGCGCGGCg- -3' miRNA: 3'- aCUuGAC-----GCGGC-GGACCCGCGCUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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