Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26865 | 5' | -61.6 | NC_005809.1 | + | 17289 | 0.66 | 0.29622 |
Target: 5'- cGaAGCcgGCGCCGC--GGGCGCGcauCCAu -3' miRNA: 3'- aC-UUGa-CGCGGCGgaCCCGCGCu--GGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 21722 | 0.67 | 0.255014 |
Target: 5'- cGAAC-GCGguacggaUGCCaccguUGGGCGCGGCCGc -3' miRNA: 3'- aCUUGaCGCg------GCGG-----ACCCGCGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 16450 | 0.67 | 0.268202 |
Target: 5'- uUGAACacgGCGUCGUagaucggGGGCGUGACgGa -3' miRNA: 3'- -ACUUGa--CGCGGCGga-----CCCGCGCUGgU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 29657 | 0.67 | 0.268202 |
Target: 5'- aUGAGgUaGcCGuuGCCcagcaGGGCGCGGCCGu -3' miRNA: 3'- -ACUUgA-C-GCggCGGa----CCCGCGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 26833 | 0.67 | 0.268202 |
Target: 5'- -aGGCUGCGCCGCCccgaUGGaGCG-GGCgAa -3' miRNA: 3'- acUUGACGCGGCGG----ACC-CGCgCUGgU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 13540 | 0.67 | 0.275 |
Target: 5'- cGAACUGUcgGCCGCCUGacucGGUGC--CCAc -3' miRNA: 3'- aCUUGACG--CGGCGGAC----CCGCGcuGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 10801 | 0.67 | 0.281935 |
Target: 5'- aUGuACUGCuG-CGCCUcGGCGCGGCUg -3' miRNA: 3'- -ACuUGACG-CgGCGGAcCCGCGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 37575 | 0.67 | 0.284748 |
Target: 5'- cGGACUGCGCCGaCCUGcuguuCGCcaacgucauggaacuGACCAg -3' miRNA: 3'- aCUUGACGCGGC-GGACcc---GCG---------------CUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 38118 | 0.66 | 0.29622 |
Target: 5'- gGAACUGgaagaagcCGCaCGCCUGGcGguguUGCGGCCGg -3' miRNA: 3'- aCUUGAC--------GCG-GCGGACC-C----GCGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 5028 | 0.67 | 0.254369 |
Target: 5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3' miRNA: 3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 25757 | 0.68 | 0.248622 |
Target: 5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3' miRNA: 3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 33930 | 0.68 | 0.236236 |
Target: 5'- cGAuACgGCGCgGCCUGGG-GCGuuuCCGa -3' miRNA: 3'- aCU-UGaCGCGgCGGACCCgCGCu--GGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 38862 | 0.71 | 0.150705 |
Target: 5'- aUGAGCggaUGCGCCGCaugGGGCaGCGcgucGCCGu -3' miRNA: 3'- -ACUUG---ACGCGGCGga-CCCG-CGC----UGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 28812 | 0.7 | 0.167874 |
Target: 5'- uUGAGCagccagcGCGCCGUCgucGGGuUGCGGCCGg -3' miRNA: 3'- -ACUUGa------CGCGGCGGa--CCC-GCGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 21171 | 0.69 | 0.18188 |
Target: 5'- -cAACaGCGCgGCCUGcuGCGCGGCCu -3' miRNA: 3'- acUUGaCGCGgCGGACc-CGCGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 16142 | 0.69 | 0.194846 |
Target: 5'- aGGACUGCgGCCGCacgcugaugguggUGGGCGUuACCGc -3' miRNA: 3'- aCUUGACG-CGGCGg------------ACCCGCGcUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 32908 | 0.68 | 0.215246 |
Target: 5'- aGAACUGCgGCCacgGCCUGcacGGCugcuguucggccaggGCGACCAc -3' miRNA: 3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 34168 | 0.68 | 0.218063 |
Target: 5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3' miRNA: 3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 34021 | 0.68 | 0.230239 |
Target: 5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3' miRNA: 3'- acuUGACGcGGCGGac-CCGCGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 15705 | 0.68 | 0.236236 |
Target: 5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3' miRNA: 3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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