Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26865 | 5' | -61.6 | NC_005809.1 | + | 32908 | 0.68 | 0.215246 |
Target: 5'- aGAACUGCgGCCacgGCCUGcacGGCugcuguucggccaggGCGACCAc -3' miRNA: 3'- aCUUGACG-CGG---CGGAC---CCG---------------CGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 34168 | 0.68 | 0.218063 |
Target: 5'- cGAACUGCucGCUGCCcgacacgUGGGCgGCGAUUc -3' miRNA: 3'- aCUUGACG--CGGCGG-------ACCCG-CGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 34021 | 0.68 | 0.230239 |
Target: 5'- --cGCUGC-CCGCCaucGGCGCGGCUg -3' miRNA: 3'- acuUGACGcGGCGGac-CCGCGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 15705 | 0.68 | 0.236236 |
Target: 5'- aGAAg-GCGuCCGCCUGGGCaucgaacuggcGCGagGCCAu -3' miRNA: 3'- aCUUgaCGC-GGCGGACCCG-----------CGC--UGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 33930 | 0.68 | 0.236236 |
Target: 5'- cGAuACgGCGCgGCCUGGG-GCGuuuCCGa -3' miRNA: 3'- aCU-UGaCGCGgCGGACCCgCGCu--GGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 25757 | 0.68 | 0.248622 |
Target: 5'- cUGGGC-GCGCUG-CUGGGCgGCGGCa- -3' miRNA: 3'- -ACUUGaCGCGGCgGACCCG-CGCUGgu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 5028 | 0.67 | 0.254369 |
Target: 5'- cGAcuACUGCGUugauauuCGCCUGGuugGCGACCGc -3' miRNA: 3'- aCU--UGACGCG-------GCGGACCcg-CGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 8679 | 0.71 | 0.138892 |
Target: 5'- cGGcuGCUGCGCCGCCcaGGuGUGCG-CCGc -3' miRNA: 3'- aCU--UGACGCGGCGGa-CC-CGCGCuGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 33560 | 0.7 | 0.156525 |
Target: 5'- cGAACuggUGCGCCGCCUGcuggaagcgcccccGCGCGGCgAg -3' miRNA: 3'- aCUUG---ACGCGGCGGACc-------------CGCGCUGgU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 20134 | 0.7 | 0.1771 |
Target: 5'- cGAACUGgacgagucCGCCGCCgucaaGGCGUGGCUg -3' miRNA: 3'- aCUUGAC--------GCGGCGGac---CCGCGCUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 7025 | 0.7 | 0.1771 |
Target: 5'- aUGGGCguuUGUGCCGCCUGuugcagcaGGCGCauGGCCu -3' miRNA: 3'- -ACUUG---ACGCGGCGGAC--------CCGCG--CUGGu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 41263 | 0.68 | 0.21863 |
Target: 5'- cGGcCUGguggcCGUCGcCCUGGGCGCGGCg- -3' miRNA: 3'- aCUuGAC-----GCGGC-GGACCCGCGCUGgu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 19045 | 0.72 | 0.117781 |
Target: 5'- cGAccGCgUGCGCCGCCUGgaaGGCGCGcucgcggaacuGCCGc -3' miRNA: 3'- aCU--UG-ACGCGGCGGAC---CCGCGC-----------UGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 2736 | 0.72 | 0.114567 |
Target: 5'- uUGAGCgcggcccgGCGCUGCUcGGGCGUgccGACCAc -3' miRNA: 3'- -ACUUGa-------CGCGGCGGaCCCGCG---CUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 14381 | 0.75 | 0.077405 |
Target: 5'- cUGGACaagGCGCCGCaccugCUGGGCGUGGgCAa -3' miRNA: 3'- -ACUUGa--CGCGGCG-----GACCCGCGCUgGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 15140 | 0.75 | 0.071098 |
Target: 5'- aGGGcCUGCgGCCGCC-GGGCGCGgugcGCCAg -3' miRNA: 3'- aCUU-GACG-CGGCGGaCCCGCGC----UGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 29824 | 0.75 | 0.065287 |
Target: 5'- gGAGC-GCGCCaagcGUCUGGGCGCGGCa- -3' miRNA: 3'- aCUUGaCGCGG----CGGACCCGCGCUGgu -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 33337 | 0.76 | 0.058247 |
Target: 5'- gUGAACUGgaacUGCCGCC-GGGCGCG-CCGc -3' miRNA: 3'- -ACUUGAC----GCGGCGGaCCCGCGCuGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 12977 | 0.8 | 0.029165 |
Target: 5'- gGAcaACUGgcaaacCGCgCGCCUGGGCGCGGCCGa -3' miRNA: 3'- aCU--UGAC------GCG-GCGGACCCGCGCUGGU- -5' |
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26865 | 5' | -61.6 | NC_005809.1 | + | 34346 | 0.66 | 0.318691 |
Target: 5'- -aAGCUGCugacgGCCGCCgaccaGCGCGACUAc -3' miRNA: 3'- acUUGACG-----CGGCGGacc--CGCGCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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