Results 21 - 40 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26867 | 5' | -52.6 | NC_005809.1 | + | 4813 | 0.7 | 0.594047 |
Target: 5'- aGCuUGUaGAGGUCGGg---GCCGGCGCCg -3' miRNA: 3'- -CG-ACG-CUUUAGCUguugUGGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 4910 | 0.67 | 0.775439 |
Target: 5'- uGUU-CGAcaGGUCGGCGACgACCagcuucuugcccucgGGCGCCa -3' miRNA: 3'- -CGAcGCU--UUAGCUGUUG-UGG---------------CCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 5287 | 0.66 | 0.80172 |
Target: 5'- cGCgGCGuuGUCGGCca---CGGCGUCg -3' miRNA: 3'- -CGaCGCuuUAGCUGuugugGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 5355 | 0.67 | 0.760836 |
Target: 5'- cGCUGCGuggcCGcCuGCACC-GCGCCc -3' miRNA: 3'- -CGACGCuuuaGCuGuUGUGGcCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 5508 | 0.7 | 0.560443 |
Target: 5'- uGCUGCcaAAGUCguagGAC-ACGCCGGcCGCCc -3' miRNA: 3'- -CGACGc-UUUAG----CUGuUGUGGCC-GCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 5560 | 0.67 | 0.771297 |
Target: 5'- cGCcaCGguAUCGACGGCGCCaacgcuGGcCGCCa -3' miRNA: 3'- -CGacGCuuUAGCUGUUGUGG------CC-GCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 6364 | 0.67 | 0.760836 |
Target: 5'- --gGCGAAccggcccacGUCGGCAAUcaggcgcagGCCGGCcgGCCc -3' miRNA: 3'- cgaCGCUU---------UAGCUGUUG---------UGGCCG--CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 6374 | 0.68 | 0.683277 |
Target: 5'- cGCUGgGuuacaccAGGUCGGCcGC-CgCGGCGCCc -3' miRNA: 3'- -CGACgC-------UUUAGCUGuUGuG-GCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 6599 | 0.76 | 0.257418 |
Target: 5'- gGCUGCGGucuuuGUCGAUGACcaGCgGGCGCg -3' miRNA: 3'- -CGACGCUu----UAGCUGUUG--UGgCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7137 | 0.74 | 0.366545 |
Target: 5'- --cGCGAAGUCGuCGGCugCGGCcuggaugaccaggGCCg -3' miRNA: 3'- cgaCGCUUUAGCuGUUGugGCCG-------------CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7207 | 0.72 | 0.484511 |
Target: 5'- aGC-GCGAuguccaCGGCAGCAUCuGCGCCg -3' miRNA: 3'- -CGaCGCUuua---GCUGUUGUGGcCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7325 | 0.69 | 0.650598 |
Target: 5'- uCUGCGAAcgCaGCAGCcgGuuGGCGUCg -3' miRNA: 3'- cGACGCUUuaGcUGUUG--UggCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7545 | 0.7 | 0.560443 |
Target: 5'- gGCgGCGugcUCGAU--CugCGGCGCCa -3' miRNA: 3'- -CGaCGCuuuAGCUGuuGugGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7637 | 0.66 | 0.8115 |
Target: 5'- gGC-GCGGc-UCGACccACGCCGGCuccuuGCCg -3' miRNA: 3'- -CGaCGCUuuAGCUGu-UGUGGCCG-----CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7650 | 0.69 | 0.627956 |
Target: 5'- cUUGCaGAAUCGACAuugcuucuCACCGgGgGCCa -3' miRNA: 3'- cGACGcUUUAGCUGUu-------GUGGC-CgCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7748 | 0.78 | 0.219193 |
Target: 5'- cCUGCGcAGUCagcgauuGCAGCACCGGCGCg -3' miRNA: 3'- cGACGCuUUAGc------UGUUGUGGCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7901 | 0.67 | 0.728664 |
Target: 5'- cGCgUGCGuAGAUCGcCAgcugcucguuGCGCuCGGCGUCc -3' miRNA: 3'- -CG-ACGC-UUUAGCuGU----------UGUG-GCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7920 | 0.69 | 0.605329 |
Target: 5'- cUUGcCGAGggCGA--ACACCGGCGCg -3' miRNA: 3'- cGAC-GCUUuaGCUguUGUGGCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 8398 | 0.74 | 0.341356 |
Target: 5'- gGCUGCGuagccAGUCGGcCAGgGCCGuGCGCUu -3' miRNA: 3'- -CGACGCu----UUAGCU-GUUgUGGC-CGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 8428 | 0.67 | 0.739507 |
Target: 5'- --cGCGGGggcGUCGcGgAACAUCGGCGCg -3' miRNA: 3'- cgaCGCUU---UAGC-UgUUGUGGCCGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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