Results 1 - 20 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26867 | 5' | -52.6 | NC_005809.1 | + | 171 | 0.68 | 0.695574 |
Target: 5'- aGCUGCcgcg-CGcAgAAUGCCGGCGUCa -3' miRNA: 3'- -CGACGcuuuaGC-UgUUGUGGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 202 | 0.68 | 0.71772 |
Target: 5'- cGCUGCcGGG-CGACAcgGCgaACUGGCGCa -3' miRNA: 3'- -CGACGcUUUaGCUGU--UG--UGGCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 381 | 0.66 | 0.791751 |
Target: 5'- ---aCGAAAUaGACGAUGCCcagGGCGCCc -3' miRNA: 3'- cgacGCUUUAgCUGUUGUGG---CCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 475 | 0.66 | 0.780582 |
Target: 5'- cGCUGUcgcggucGGAugccUCGGCAGCAUacuGCGCCg -3' miRNA: 3'- -CGACG-------CUUu---AGCUGUUGUGgc-CGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 621 | 0.69 | 0.605329 |
Target: 5'- aGCaGCGccGUgGACAcgGCGuCCGGCGUCg -3' miRNA: 3'- -CGaCGCuuUAgCUGU--UGU-GGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 679 | 0.68 | 0.706686 |
Target: 5'- gGCcGCcua--CGGCGGCGCCGGCcggGCCg -3' miRNA: 3'- -CGaCGcuuuaGCUGUUGUGGCCG---CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 731 | 0.67 | 0.750235 |
Target: 5'- --gGCGGcuuugcCGACAACGCCGGCcagGUCu -3' miRNA: 3'- cgaCGCUuua---GCUGUUGUGGCCG---CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 1061 | 0.68 | 0.71772 |
Target: 5'- cGCUcGCGGAuuUCcuguGCGAC-CCGGCGCg -3' miRNA: 3'- -CGA-CGCUUu-AGc---UGUUGuGGCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 1338 | 0.68 | 0.695574 |
Target: 5'- aGC-GCGAGgaagccgugGUCGGCGGCcuugcgcauCCGGCGaCCg -3' miRNA: 3'- -CGaCGCUU---------UAGCUGUUGu--------GGCCGC-GG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 1463 | 0.66 | 0.791751 |
Target: 5'- --gGCGcgGUCGGCGGCcucCUGGCagGCCg -3' miRNA: 3'- cgaCGCuuUAGCUGUUGu--GGCCG--CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 1994 | 0.68 | 0.700027 |
Target: 5'- gGCcGCGAGGUCGgacuugaagugguacGCcaccAGCACCGGCauaccgGCCg -3' miRNA: 3'- -CGaCGCUUUAGC---------------UG----UUGUGGCCG------CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 2023 | 0.71 | 0.505753 |
Target: 5'- cGCUgGCGAAGUCGcgcagGCGAUagaACaCGGCGCg -3' miRNA: 3'- -CGA-CGCUUUAGC-----UGUUG---UG-GCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 2076 | 0.69 | 0.605329 |
Target: 5'- aGCU-UGAcAUCGugGACAUCGGC-CCa -3' miRNA: 3'- -CGAcGCUuUAGCugUUGUGGCCGcGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 2417 | 0.67 | 0.765038 |
Target: 5'- --aGCGuAGGUguaCGGCAGCAggccggccucgaagaUCGGCGCCa -3' miRNA: 3'- cgaCGC-UUUA---GCUGUUGU---------------GGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 3482 | 0.75 | 0.300927 |
Target: 5'- cGCUG-GAGuUCGACGGC-CCGGCGUUc -3' miRNA: 3'- -CGACgCUUuAGCUGUUGuGGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 3687 | 0.66 | 0.791751 |
Target: 5'- -gUGCGAAuccaccaCGGCGACGCgcugccccaugCGGCGCa -3' miRNA: 3'- cgACGCUUua-----GCUGUUGUG-----------GCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 4209 | 0.66 | 0.821082 |
Target: 5'- ---uUGGAAUCGGCGcGCACC-GUGCCa -3' miRNA: 3'- cgacGCUUUAGCUGU-UGUGGcCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 4250 | 0.66 | 0.80172 |
Target: 5'- --gGCGuAGUCGGugccggccguCAGCGCCGGCauggugaugGCCg -3' miRNA: 3'- cgaCGCuUUAGCU----------GUUGUGGCCG---------CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 4289 | 0.67 | 0.759781 |
Target: 5'- gGCUGUacuGGUUGACGcccauguaggacaGCuuGCCGGCGUCa -3' miRNA: 3'- -CGACGcu-UUAGCUGU-------------UG--UGGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 4811 | 0.71 | 0.494018 |
Target: 5'- cGCUGCGGGAUugcuggcCGGCGACA--GGuCGCCg -3' miRNA: 3'- -CGACGCUUUA-------GCUGUUGUggCC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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