miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26867 5' -52.6 NC_005809.1 + 7207 0.72 0.484511
Target:  5'- aGC-GCGAuguccaCGGCAGCAUCuGCGCCg -3'
miRNA:   3'- -CGaCGCUuua---GCUGUUGUGGcCGCGG- -5'
26867 5' -52.6 NC_005809.1 + 37738 0.73 0.385568
Target:  5'- cGCUuuccGUGAAuUCGACGacgGCGCCGGCcCCg -3'
miRNA:   3'- -CGA----CGCUUuAGCUGU---UGUGGCCGcGG- -5'
26867 5' -52.6 NC_005809.1 + 12050 0.73 0.413852
Target:  5'- aGCgUGuCGAAGUCGAUGGCGCCgauGGUGUCc -3'
miRNA:   3'- -CG-AC-GCUUUAGCUGUUGUGG---CCGCGG- -5'
26867 5' -52.6 NC_005809.1 + 11494 0.73 0.423559
Target:  5'- cCUGCGAcaccgcAAagGGCAGCGCCuGCGCUg -3'
miRNA:   3'- cGACGCU------UUagCUGUUGUGGcCGCGG- -5'
26867 5' -52.6 NC_005809.1 + 35315 0.73 0.433402
Target:  5'- aGCUGCacaAGGcCGGCGACAUCGGCccgcGCCa -3'
miRNA:   3'- -CGACGc--UUUaGCUGUUGUGGCCG----CGG- -5'
26867 5' -52.6 NC_005809.1 + 24399 0.72 0.463705
Target:  5'- cGCUGCGcAAGUUGAagaAGCgcaGCCGGC-CCg -3'
miRNA:   3'- -CGACGC-UUUAGCUg--UUG---UGGCCGcGG- -5'
26867 5' -52.6 NC_005809.1 + 32777 0.72 0.473011
Target:  5'- gGCgGCGAAGuccgcccUCGGCAccuCGCUGGUGCUg -3'
miRNA:   3'- -CGaCGCUUU-------AGCUGUu--GUGGCCGCGG- -5'
26867 5' -52.6 NC_005809.1 + 17603 0.72 0.474051
Target:  5'- gGCUGCGc-GUUGuCGAUACCGGCcucgauguuuGCCg -3'
miRNA:   3'- -CGACGCuuUAGCuGUUGUGGCCG----------CGG- -5'
26867 5' -52.6 NC_005809.1 + 23953 0.72 0.48346
Target:  5'- cGCccgGCGAGGUCGGCAuuugccgauucauGCGCguauuCGGCGCa -3'
miRNA:   3'- -CGa--CGCUUUAGCUGU-------------UGUG-----GCCGCGg -5'
26867 5' -52.6 NC_005809.1 + 34107 0.74 0.349899
Target:  5'- gGCUGCGgcAUCGcaggccaccuCGACGCCGacaucGCGCCg -3'
miRNA:   3'- -CGACGCuuUAGCu---------GUUGUGGC-----CGCGG- -5'
26867 5' -52.6 NC_005809.1 + 34866 0.74 0.341356
Target:  5'- cGCUGCaGuucAUCGGCAA-GCCGGcCGCCg -3'
miRNA:   3'- -CGACG-Cuu-UAGCUGUUgUGGCC-GCGG- -5'
26867 5' -52.6 NC_005809.1 + 9991 0.74 0.341356
Target:  5'- aGCgugGCGggGUCGAaagUGCCGcGCGCCc -3'
miRNA:   3'- -CGa--CGCuuUAGCUguuGUGGC-CGCGG- -5'
26867 5' -52.6 NC_005809.1 + 10472 0.78 0.219193
Target:  5'- cCUG-GAAGUCGcGCAGCACCGGC-CCg -3'
miRNA:   3'- cGACgCUUUAGC-UGUUGUGGCCGcGG- -5'
26867 5' -52.6 NC_005809.1 + 25721 0.78 0.219193
Target:  5'- cGCgGCGggGUCGuCGuccuCACCGGCGgCa -3'
miRNA:   3'- -CGaCGCuuUAGCuGUu---GUGGCCGCgG- -5'
26867 5' -52.6 NC_005809.1 + 32006 0.76 0.293299
Target:  5'- -gUGCGAAAcccUCGAC-ACGCUGGaCGCCc -3'
miRNA:   3'- cgACGCUUU---AGCUGuUGUGGCC-GCGG- -5'
26867 5' -52.6 NC_005809.1 + 36156 0.75 0.300927
Target:  5'- cGCgaGCGAGGacgaguUCGACGACAUCaccgagGGCGCCg -3'
miRNA:   3'- -CGa-CGCUUU------AGCUGUUGUGG------CCGCGG- -5'
26867 5' -52.6 NC_005809.1 + 3482 0.75 0.300927
Target:  5'- cGCUG-GAGuUCGACGGC-CCGGCGUUc -3'
miRNA:   3'- -CGACgCUUuAGCUGUUGuGGCCGCGG- -5'
26867 5' -52.6 NC_005809.1 + 9839 0.75 0.308708
Target:  5'- cGCUGCaccucGGuuUCGGCGucgaugagcgugGCACCGGCGCg -3'
miRNA:   3'- -CGACG-----CUuuAGCUGU------------UGUGGCCGCGg -5'
26867 5' -52.6 NC_005809.1 + 18372 0.75 0.332966
Target:  5'- gGCgGCGAGGUUGGCcuUGCCgauGGCGCCg -3'
miRNA:   3'- -CGaCGCUUUAGCUGuuGUGG---CCGCGG- -5'
26867 5' -52.6 NC_005809.1 + 8398 0.74 0.341356
Target:  5'- gGCUGCGuagccAGUCGGcCAGgGCCGuGCGCUu -3'
miRNA:   3'- -CGACGCu----UUAGCU-GUUgUGGC-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.