Results 1 - 20 of 214 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26867 | 5' | -52.6 | NC_005809.1 | + | 24999 | 1.15 | 0.00054 |
Target: 5'- aGCUGCGAAAUCGACAACACCGGCGCCg -3' miRNA: 3'- -CGACGCUUUAGCUGUUGUGGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 34790 | 0.8 | 0.152803 |
Target: 5'- gGCgGCGAAGg-GugGACGCCGGCGCa -3' miRNA: 3'- -CGaCGCUUUagCugUUGUGGCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 15226 | 0.78 | 0.198661 |
Target: 5'- uGCUGCGAGGUCGGCccggccuacguggaaAGCAaCGcGCGCCu -3' miRNA: 3'- -CGACGCUUUAGCUG---------------UUGUgGC-CGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 7748 | 0.78 | 0.219193 |
Target: 5'- cCUGCGcAGUCagcgauuGCAGCACCGGCGCg -3' miRNA: 3'- cGACGCuUUAGc------UGUUGUGGCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 10472 | 0.78 | 0.219193 |
Target: 5'- cCUG-GAAGUCGcGCAGCACCGGC-CCg -3' miRNA: 3'- cGACgCUUUAGC-UGUUGUGGCCGcGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 25721 | 0.78 | 0.219193 |
Target: 5'- cGCgGCGggGUCGuCGuccuCACCGGCGgCa -3' miRNA: 3'- -CGaCGCuuUAGCuGUu---GUGGCCGCgG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 17914 | 0.77 | 0.250688 |
Target: 5'- cGCgGCGGGcgCGACAACACCauccuGGCccGCCg -3' miRNA: 3'- -CGaCGCUUuaGCUGUUGUGG-----CCG--CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 23515 | 0.76 | 0.257418 |
Target: 5'- --gGCGAggacacgcuGAUCGACGcCGCCGGCgGCCg -3' miRNA: 3'- cgaCGCU---------UUAGCUGUuGUGGCCG-CGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 6599 | 0.76 | 0.257418 |
Target: 5'- gGCUGCGGucuuuGUCGAUGACcaGCgGGCGCg -3' miRNA: 3'- -CGACGCUu----UAGCUGUUG--UGgCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 32108 | 0.76 | 0.264296 |
Target: 5'- uGCUGCGcGAcuUCcagGGCGACGCCaagGGCGCCa -3' miRNA: 3'- -CGACGCuUU--AG---CUGUUGUGG---CCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 30503 | 0.76 | 0.271321 |
Target: 5'- --aGCGAAA-CGGCAGgacacCAUCGGCGCCa -3' miRNA: 3'- cgaCGCUUUaGCUGUU-----GUGGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 32006 | 0.76 | 0.293299 |
Target: 5'- -gUGCGAAAcccUCGAC-ACGCUGGaCGCCc -3' miRNA: 3'- cgACGCUUU---AGCUGuUGUGGCC-GCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 3482 | 0.75 | 0.300927 |
Target: 5'- cGCUG-GAGuUCGACGGC-CCGGCGUUc -3' miRNA: 3'- -CGACgCUUuAGCUGUUGuGGCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 36156 | 0.75 | 0.300927 |
Target: 5'- cGCgaGCGAGGacgaguUCGACGACAUCaccgagGGCGCCg -3' miRNA: 3'- -CGa-CGCUUU------AGCUGUUGUGG------CCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 9839 | 0.75 | 0.308708 |
Target: 5'- cGCUGCaccucGGuuUCGGCGucgaugagcgugGCACCGGCGCg -3' miRNA: 3'- -CGACG-----CUuuAGCUGU------------UGUGGCCGCGg -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 18372 | 0.75 | 0.332966 |
Target: 5'- gGCgGCGAGGUUGGCcuUGCCgauGGCGCCg -3' miRNA: 3'- -CGaCGCUUUAGCUGuuGUGG---CCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 36986 | 0.74 | 0.341356 |
Target: 5'- --gGCGGAcAUCGACAcgguggcggccaGCGuuGGCGCCg -3' miRNA: 3'- cgaCGCUU-UAGCUGU------------UGUggCCGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 9991 | 0.74 | 0.341356 |
Target: 5'- aGCgugGCGggGUCGAaagUGCCGcGCGCCc -3' miRNA: 3'- -CGa--CGCuuUAGCUguuGUGGC-CGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 8398 | 0.74 | 0.341356 |
Target: 5'- gGCUGCGuagccAGUCGGcCAGgGCCGuGCGCUu -3' miRNA: 3'- -CGACGCu----UUAGCU-GUUgUGGC-CGCGG- -5' |
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26867 | 5' | -52.6 | NC_005809.1 | + | 34866 | 0.74 | 0.341356 |
Target: 5'- cGCUGCaGuucAUCGGCAA-GCCGGcCGCCg -3' miRNA: 3'- -CGACG-Cuu-UAGCUGUUgUGGCC-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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