Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 1104 | 0.71 | 0.550982 |
Target: 5'- uGGCGGCGGUAGGCgGCAaAGGcuuGCCg -3' miRNA: 3'- -CCGCCGCUGUUCGaCGU-UCUuu-UGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 1321 | 0.78 | 0.23322 |
Target: 5'- cGGCcaccaGGcCGACAAGC-GCGAGGAAGCCg -3' miRNA: 3'- -CCG-----CC-GCUGUUCGaCGUUCUUUUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 1724 | 0.66 | 0.79857 |
Target: 5'- cGGUGGCGACAAugUGguAGAugaacACCg -3' miRNA: 3'- -CCGCCGCUGUUcgACguUCUuu---UGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 4043 | 0.7 | 0.596803 |
Target: 5'- cGGCcGCGGCGAGCgGCAGGccagcGGCCc -3' miRNA: 3'- -CCGcCGCUGUUCGaCGUUCuu---UUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 4825 | 0.67 | 0.777845 |
Target: 5'- uGGcCGGCGACAGGUcGCcguAGucgauGACCa -3' miRNA: 3'- -CC-GCCGCUGUUCGaCGu--UCuu---UUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 5069 | 0.66 | 0.84679 |
Target: 5'- aGGCcGCGGCAGGUuuUGCGguuGGAAcaggcGGCCg -3' miRNA: 3'- -CCGcCGCUGUUCG--ACGU---UCUU-----UUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 6642 | 0.69 | 0.654737 |
Target: 5'- cGCGGacaCGuACAGGUUGCcGGGGAAGCCg -3' miRNA: 3'- cCGCC---GC-UGUUCGACG-UUCUUUUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 7394 | 0.66 | 0.815582 |
Target: 5'- cGCGGCGACcuuccaccagcuugAAGCcggGCAccGGAugGCCg -3' miRNA: 3'- cCGCCGCUG--------------UUCGa--CGU--UCUuuUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 7685 | 0.66 | 0.79857 |
Target: 5'- uGGCGGCGAUcuGCgGCcGGu-AGCCc -3' miRNA: 3'- -CCGCCGCUGuuCGaCGuUCuuUUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 7739 | 0.66 | 0.818521 |
Target: 5'- cGGCGGcCGGCuuGCUGUuggcgacgAAGGAAuCCa -3' miRNA: 3'- -CCGCC-GCUGuuCGACG--------UUCUUUuGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 9342 | 0.7 | 0.619953 |
Target: 5'- gGGCGGCGGCAuccuuuugcAGUUGCuugauGAugcGGCCg -3' miRNA: 3'- -CCGCCGCUGU---------UCGACGuu---CUu--UUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 9901 | 0.71 | 0.539682 |
Target: 5'- cGUGGCGAuguCGAGCUGCAcuucgaGGAAAaagugGCCg -3' miRNA: 3'- cCGCCGCU---GUUCGACGU------UCUUU-----UGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 10222 | 0.68 | 0.689311 |
Target: 5'- cGGCGGCGACcgcagcgaccuGGGCgGCGguugucGGGAcGCCg -3' miRNA: 3'- -CCGCCGCUG-----------UUCGaCGU------UCUUuUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 10356 | 0.71 | 0.516221 |
Target: 5'- uGGUGGUgaguucgGACAGGC-GCGAGAAAACa- -3' miRNA: 3'- -CCGCCG-------CUGUUCGaCGUUCUUUUGga -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 10866 | 0.68 | 0.723334 |
Target: 5'- cGCGcGCGGCGGGCUGguCAGGcgGugCUg -3' miRNA: 3'- cCGC-CGCUGUUCGAC--GUUCuuUugGA- -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 11421 | 0.68 | 0.712076 |
Target: 5'- aGCGGCGAgCcGGCgUGCAGGuc-GCCg -3' miRNA: 3'- cCGCCGCU-GuUCG-ACGUUCuuuUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 11757 | 0.76 | 0.289476 |
Target: 5'- -uCGGCGACAGGUUGCAgcGGAuuuGCCg -3' miRNA: 3'- ccGCCGCUGUUCGACGU--UCUuu-UGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 12309 | 0.7 | 0.585273 |
Target: 5'- cGGCGGCGuCGAauucGUUGCucauuuacGGGAAACCUu -3' miRNA: 3'- -CCGCCGCuGUU----CGACGu-------UCUUUUGGA- -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 13324 | 0.7 | 0.573787 |
Target: 5'- aGGCGGCG-UAGGCUuucgGCAGGuc-GCCg -3' miRNA: 3'- -CCGCCGCuGUUCGA----CGUUCuuuUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 14830 | 0.68 | 0.689311 |
Target: 5'- --gGGCaGCGAGUUGCGcGAGGGCCUc -3' miRNA: 3'- ccgCCGcUGUUCGACGUuCUUUUGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home