Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 7685 | 0.66 | 0.79857 |
Target: 5'- uGGCGGCGAUcuGCgGCcGGu-AGCCc -3' miRNA: 3'- -CCGCCGCUGuuCGaCGuUCuuUUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 18818 | 0.69 | 0.647787 |
Target: 5'- uGGCGGCG-CAggaAGCUGCgaAuuuugcgcggcauguAGAAGGCCg -3' miRNA: 3'- -CCGCCGCuGU---UCGACG--U---------------UCUUUUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 23652 | 0.68 | 0.689311 |
Target: 5'- cGGCGGCGggcaGCAA-CUGCAccAGgcGACCc -3' miRNA: 3'- -CCGCCGC----UGUUcGACGU--UCuuUUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 31340 | 0.68 | 0.700731 |
Target: 5'- cGCGGCGACAuucaAGCaguaccUGgAAGAAGACg- -3' miRNA: 3'- cCGCCGCUGU----UCG------ACgUUCUUUUGga -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 11421 | 0.68 | 0.712076 |
Target: 5'- aGCGGCGAgCcGGCgUGCAGGuc-GCCg -3' miRNA: 3'- cCGCCGCU-GuUCG-ACGUUCuuuUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 34192 | 0.67 | 0.767225 |
Target: 5'- gGGCGGCGAUucucgaagauucGAGCgcggcggcGCAGGAGGuACUg -3' miRNA: 3'- -CCGCCGCUG------------UUCGa-------CGUUCUUU-UGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 4825 | 0.67 | 0.777845 |
Target: 5'- uGGcCGGCGACAGGUcGCcguAGucgauGACCa -3' miRNA: 3'- -CC-GCCGCUGUUCGaCGu--UCuu---UUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 27441 | 0.67 | 0.788298 |
Target: 5'- cGGCGGCcGCAGGCccugGCGcuGGuauGCCa -3' miRNA: 3'- -CCGCCGcUGUUCGa---CGU--UCuuuUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 35174 | 0.67 | 0.788298 |
Target: 5'- -cCGGCuuCAAGCUGguGGAAGgucGCCg -3' miRNA: 3'- ccGCCGcuGUUCGACguUCUUU---UGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 9342 | 0.7 | 0.619953 |
Target: 5'- gGGCGGCGGCAuccuuuugcAGUUGCuugauGAugcGGCCg -3' miRNA: 3'- -CCGCCGCUGU---------UCGACGuu---CUu--UUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 21454 | 0.7 | 0.585273 |
Target: 5'- uGCGGCGG-GGGCgGCAGGAuguuGGCCUc -3' miRNA: 3'- cCGCCGCUgUUCGaCGUUCUu---UUGGA- -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 12309 | 0.7 | 0.585273 |
Target: 5'- cGGCGGCGuCGAauucGUUGCucauuuacGGGAAACCUu -3' miRNA: 3'- -CCGCCGCuGUU----CGACGu-------UCUUUUGGA- -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 11757 | 0.76 | 0.289476 |
Target: 5'- -uCGGCGACAGGUUGCAgcGGAuuuGCCg -3' miRNA: 3'- ccGCCGCUGUUCGACGU--UCUuu-UGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 14907 | 0.73 | 0.42215 |
Target: 5'- cGCGGCGAUcuGCUGCuGGccGGCCUc -3' miRNA: 3'- cCGCCGCUGuuCGACGuUCuuUUGGA- -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 30422 | 0.73 | 0.432214 |
Target: 5'- cGGCauGGCGAUGAGC-GCGGGcAGGGCCUc -3' miRNA: 3'- -CCG--CCGCUGUUCGaCGUUC-UUUUGGA- -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 18028 | 0.73 | 0.452754 |
Target: 5'- uGCGGguucuuguCGGCGGGCUGCuuGggGGCCUu -3' miRNA: 3'- cCGCC--------GCUGUUCGACGuuCuuUUGGA- -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 36432 | 0.71 | 0.517329 |
Target: 5'- cGGCGGCGAguGGgUGCugauGGAAGGgCa -3' miRNA: 3'- -CCGCCGCUguUCgACGu---UCUUUUgGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 9901 | 0.71 | 0.539682 |
Target: 5'- cGUGGCGAuguCGAGCUGCAcuucgaGGAAAaagugGCCg -3' miRNA: 3'- cCGCCGCU---GUUCGACGU------UCUUU-----UGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 13324 | 0.7 | 0.573787 |
Target: 5'- aGGCGGCG-UAGGCUuucgGCAGGuc-GCCg -3' miRNA: 3'- -CCGCCGCuGUUCGA----CGUUCuuuUGGa -5' |
|||||||
26875 | 5' | -51.5 | NC_005809.1 | + | 29517 | 0.7 | 0.581822 |
Target: 5'- uGGCGaCGACAGGCUGUgcccccuggccgcaGAGGAcACCc -3' miRNA: 3'- -CCGCcGCUGUUCGACG--------------UUCUUuUGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home