Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26880 | 5' | -61.7 | NC_005809.1 | + | 366 | 0.68 | 0.223815 |
Target: 5'- aUCCggguGUGCUUggccugccgauugaGCGC-GG-CCAGCGCGCg -3' miRNA: 3'- -AGG----UACGAG--------------CGCGuCCgGGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 1048 | 0.66 | 0.290419 |
Target: 5'- gCCGUggcguauucGCUCGCGgAuuuccugugcGaCCCGGCGCGCg -3' miRNA: 3'- aGGUA---------CGAGCGCgU----------CcGGGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 1103 | 0.72 | 0.117523 |
Target: 5'- gCCGUGUcgcgcggcaugUCGCGCAucGGCCCGGUguaaccguuagcucGCGCu -3' miRNA: 3'- aGGUACG-----------AGCGCGU--CCGGGUCG--------------CGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 1878 | 0.66 | 0.312539 |
Target: 5'- cCCGUgGC-CgGCGCuGGCCgGGUGgGCg -3' miRNA: 3'- aGGUA-CGaG-CGCGuCCGGgUCGCgCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 2013 | 0.73 | 0.105185 |
Target: 5'- cCCAgGCgcucgcuggcgaagUCGCGCAGGCgauagaacaCGGCGCGCa -3' miRNA: 3'- aGGUaCG--------------AGCGCGUCCGg--------GUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 2556 | 0.74 | 0.089693 |
Target: 5'- aCCuugGCaUGUGCGacacGGCCCAGCGCGUg -3' miRNA: 3'- aGGua-CGaGCGCGU----CCGGGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 2727 | 0.73 | 0.106066 |
Target: 5'- gCCGgacGCUUgaGCGC-GGCCCGGCGCuGCu -3' miRNA: 3'- aGGUa--CGAG--CGCGuCCGGGUCGCG-CG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 2824 | 0.66 | 0.290419 |
Target: 5'- gCCAggUGCUCGCGgcCAcGCgCAGCgGCGCc -3' miRNA: 3'- aGGU--ACGAGCGC--GUcCGgGUCG-CGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 3471 | 0.71 | 0.135581 |
Target: 5'- cCCgAUGUUCGCGCuggaguucgacGGCCCGGCguuccaguacgcaGCGCg -3' miRNA: 3'- aGG-UACGAGCGCGu----------CCGGGUCG-------------CGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 4032 | 0.78 | 0.044028 |
Target: 5'- gUCAUGC-CGCGCGGGUCgAGCGCaGCc -3' miRNA: 3'- aGGUACGaGCGCGUCCGGgUCGCG-CG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 4388 | 0.73 | 0.100318 |
Target: 5'- gCCAggcGCcgUCGCGcCGGGCCUugAGCGUGCg -3' miRNA: 3'- aGGUa--CG--AGCGC-GUCCGGG--UCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 4663 | 0.68 | 0.243616 |
Target: 5'- -aCA-GgUUGUugGCGGGCaCCAGCGCGCc -3' miRNA: 3'- agGUaCgAGCG--CGUCCG-GGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 5143 | 0.67 | 0.249898 |
Target: 5'- -aCGUGC-CGCGCAGGCggCCGuCGCuGCu -3' miRNA: 3'- agGUACGaGCGCGUCCG--GGUcGCG-CG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 5617 | 0.68 | 0.214159 |
Target: 5'- --gGUGCguuUCGCGCGuGGCgCGGCGCaGCu -3' miRNA: 3'- aggUACG---AGCGCGU-CCGgGUCGCG-CG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 5732 | 0.67 | 0.276366 |
Target: 5'- --gAUG-UCGCaCAGaucGCCCAGCGCGCc -3' miRNA: 3'- aggUACgAGCGcGUC---CGGGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 6482 | 0.71 | 0.132283 |
Target: 5'- -gCAcGC-CGCGCAGGCCCGcauucaCGCGCu -3' miRNA: 3'- agGUaCGaGCGCGUCCGGGUc-----GCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 6619 | 0.69 | 0.192842 |
Target: 5'- aCCA-GCggGCGCGuGGCgCuGCGCGCg -3' miRNA: 3'- aGGUaCGagCGCGU-CCGgGuCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 6693 | 0.66 | 0.312539 |
Target: 5'- gCCA---UCGUGCAGGCacaccuuguCCugGGCGCGCa -3' miRNA: 3'- aGGUacgAGCGCGUCCG---------GG--UCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 7770 | 0.71 | 0.132283 |
Target: 5'- aUCCAgGCUCGCGCcuucGCCCuGCGagGCg -3' miRNA: 3'- -AGGUaCGAGCGCGuc--CGGGuCGCg-CG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 7837 | 0.67 | 0.283324 |
Target: 5'- cCCAUGUUCaGCGCGauGGUgaGGCGgGCu -3' miRNA: 3'- aGGUACGAG-CGCGU--CCGggUCGCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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