miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26880 5' -61.7 NC_005809.1 + 23086 0.68 0.236859
Target:  5'- -aCAUGCUCGCcccgacgccaacgGCGGcGCCCacGGCGacaGCg -3'
miRNA:   3'- agGUACGAGCG-------------CGUC-CGGG--UCGCg--CG- -5'
26880 5' -61.7 NC_005809.1 + 3471 0.71 0.135581
Target:  5'- cCCgAUGUUCGCGCuggaguucgacGGCCCGGCguuccaguacgcaGCGCg -3'
miRNA:   3'- aGG-UACGAGCGCGu----------CCGGGUCG-------------CGCG- -5'
26880 5' -61.7 NC_005809.1 + 9396 0.71 0.135952
Target:  5'- gCCAcUGCaugUCGCGCAGGCC--GCGgGCu -3'
miRNA:   3'- aGGU-ACG---AGCGCGUCCGGguCGCgCG- -5'
26880 5' -61.7 NC_005809.1 + 18144 0.7 0.151583
Target:  5'- gCCcgGCUCGCGCAGcuugccgaaauaGCCCuguuucAGUGCGa -3'
miRNA:   3'- aGGuaCGAGCGCGUC------------CGGG------UCGCGCg -5'
26880 5' -61.7 NC_005809.1 + 27832 0.69 0.182896
Target:  5'- ---cUGCcCGCGguGGCgCCGGCcGCGCc -3'
miRNA:   3'- agguACGaGCGCguCCG-GGUCG-CGCG- -5'
26880 5' -61.7 NC_005809.1 + 22044 0.69 0.192842
Target:  5'- gCCAUGUugcggucgUCGCGCuugcucGGGUcgcggUCGGCGCGCg -3'
miRNA:   3'- aGGUACG--------AGCGCG------UCCG-----GGUCGCGCG- -5'
26880 5' -61.7 NC_005809.1 + 19467 0.69 0.208647
Target:  5'- gCCAUaguucaGCUUGCGcCAGGUgCCGGUGgGCa -3'
miRNA:   3'- aGGUA------CGAGCGC-GUCCG-GGUCGCgCG- -5'
26880 5' -61.7 NC_005809.1 + 22665 0.69 0.208647
Target:  5'- aUCCAgcuuucgcGCUCgguGCGCAGuugccCCCAGCGCGa -3'
miRNA:   3'- -AGGUa-------CGAG---CGCGUCc----GGGUCGCGCg -5'
26880 5' -61.7 NC_005809.1 + 10843 0.68 0.219795
Target:  5'- gUCUugagGUGgUCGaGCAGGCCCuGCGUGg -3'
miRNA:   3'- -AGG----UACgAGCgCGUCCGGGuCGCGCg -5'
26880 5' -61.7 NC_005809.1 + 12274 0.71 0.128704
Target:  5'- gUCCuggGCggGuUGCuGGCCCAGCGUGCc -3'
miRNA:   3'- -AGGua-CGagC-GCGuCCGGGUCGCGCG- -5'
26880 5' -61.7 NC_005809.1 + 1103 0.72 0.117523
Target:  5'- gCCGUGUcgcgcggcaugUCGCGCAucGGCCCGGUguaaccguuagcucGCGCu -3'
miRNA:   3'- aGGUACG-----------AGCGCGU--CCGGGUCG--------------CGCG- -5'
26880 5' -61.7 NC_005809.1 + 27438 0.72 0.113372
Target:  5'- gCCcgGCggcCGCAGGCCCuggcgcugguaugccAGCGCGCc -3'
miRNA:   3'- aGGuaCGagcGCGUCCGGG---------------UCGCGCG- -5'
26880 5' -61.7 NC_005809.1 + 4032 0.78 0.044028
Target:  5'- gUCAUGC-CGCGCGGGUCgAGCGCaGCc -3'
miRNA:   3'- aGGUACGaGCGCGUCCGGgUCGCG-CG- -5'
26880 5' -61.7 NC_005809.1 + 25924 0.75 0.067428
Target:  5'- -gCA-GCUUGCGguGGCCCAGCaugucccGCGCu -3'
miRNA:   3'- agGUaCGAGCGCguCCGGGUCG-------CGCG- -5'
26880 5' -61.7 NC_005809.1 + 16054 0.75 0.06762
Target:  5'- gCCA-GUUCGCGCAcguGGCCgCcGCGCGCg -3'
miRNA:   3'- aGGUaCGAGCGCGU---CCGG-GuCGCGCG- -5'
26880 5' -61.7 NC_005809.1 + 31032 0.74 0.080143
Target:  5'- gCCGagGCaaUCGCGCGGGCCaacGUGCGCg -3'
miRNA:   3'- aGGUa-CG--AGCGCGUCCGGgu-CGCGCG- -5'
26880 5' -61.7 NC_005809.1 + 15138 0.73 0.103155
Target:  5'- cCCAUGCUgGCgGCGGaugcGCCCAGgGCGa -3'
miRNA:   3'- aGGUACGAgCG-CGUC----CGGGUCgCGCg -5'
26880 5' -61.7 NC_005809.1 + 2013 0.73 0.105185
Target:  5'- cCCAgGCgcucgcuggcgaagUCGCGCAGGCgauagaacaCGGCGCGCa -3'
miRNA:   3'- aGGUaCG--------------AGCGCGUCCGg--------GUCGCGCG- -5'
26880 5' -61.7 NC_005809.1 + 29560 0.72 0.112122
Target:  5'- gCCGUGCucgggguaUCGCGuCAGgucggccgcGCCCAgGCGCGCg -3'
miRNA:   3'- aGGUACG--------AGCGC-GUC---------CGGGU-CGCGCG- -5'
26880 5' -61.7 NC_005809.1 + 7950 0.72 0.112122
Target:  5'- uUCCGacaGCUUGCcCGuGGCCuCGGCGCGCa -3'
miRNA:   3'- -AGGUa--CGAGCGcGU-CCGG-GUCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.