miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26882 3' -54.5 NC_005809.1 + 8174 0.66 0.63928
Target:  5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3'
miRNA:   3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5'
26882 3' -54.5 NC_005809.1 + 10951 0.67 0.627956
Target:  5'- -uUGAGGCCCuGcCACGCUGCGUa---- -3'
miRNA:   3'- cuGCUUUGGG-C-GUGCGACGCGcuuag -5'
26882 3' -54.5 NC_005809.1 + 35575 0.67 0.616635
Target:  5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3'
miRNA:   3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5'
26882 3' -54.5 NC_005809.1 + 33152 0.67 0.598556
Target:  5'- cGACGcuauucaagaccugcAAGCCCGCgGC-CUGCGCGAc-- -3'
miRNA:   3'- -CUGC---------------UUUGGGCG-UGcGACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 26496 0.67 0.594047
Target:  5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3'
miRNA:   3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5'
26882 3' -54.5 NC_005809.1 + 220 0.67 0.59292
Target:  5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3'
miRNA:   3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 5611 0.67 0.582799
Target:  5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3'
miRNA:   3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5'
26882 3' -54.5 NC_005809.1 + 14771 0.68 0.571595
Target:  5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3'
miRNA:   3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5'
26882 3' -54.5 NC_005809.1 + 21189 0.68 0.560443
Target:  5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3'
miRNA:   3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5'
26882 3' -54.5 NC_005809.1 + 26031 0.68 0.53833
Target:  5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3'
miRNA:   3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5'
26882 3' -54.5 NC_005809.1 + 33331 0.68 0.537232
Target:  5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3'
miRNA:   3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 33211 0.68 0.537232
Target:  5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3'
miRNA:   3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 32287 0.68 0.527384
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5'
26882 3' -54.5 NC_005809.1 + 4488 0.68 0.527384
Target:  5'- cGACGAAACCgccggaUGCGCGCgGCGCc---- -3'
miRNA:   3'- -CUGCUUUGG------GCGUGCGaCGCGcuuag -5'
26882 3' -54.5 NC_005809.1 + 17999 0.69 0.502541
Target:  5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3'
miRNA:   3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5'
26882 3' -54.5 NC_005809.1 + 22479 0.69 0.474051
Target:  5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3'
miRNA:   3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5'
26882 3' -54.5 NC_005809.1 + 27969 0.7 0.453479
Target:  5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3'
miRNA:   3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 24776 0.7 0.452463
Target:  5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3'
miRNA:   3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5'
26882 3' -54.5 NC_005809.1 + 17487 0.7 0.443377
Target:  5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3'
miRNA:   3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5'
26882 3' -54.5 NC_005809.1 + 28895 0.7 0.433402
Target:  5'- cGACGAcAUCCuCACGgUGCGCG-GUCa -3'
miRNA:   3'- -CUGCUuUGGGcGUGCgACGCGCuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.