Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26882 | 3' | -54.5 | NC_005809.1 | + | 32287 | 0.68 | 0.527384 |
Target: 5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3' miRNA: 3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 33211 | 0.68 | 0.537232 |
Target: 5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3' miRNA: 3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 33331 | 0.68 | 0.537232 |
Target: 5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3' miRNA: 3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 26031 | 0.68 | 0.53833 |
Target: 5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3' miRNA: 3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 21189 | 0.68 | 0.560443 |
Target: 5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3' miRNA: 3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 14771 | 0.68 | 0.571595 |
Target: 5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3' miRNA: 3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 5611 | 0.67 | 0.582799 |
Target: 5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3' miRNA: 3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 220 | 0.67 | 0.59292 |
Target: 5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3' miRNA: 3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 26496 | 0.67 | 0.594047 |
Target: 5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3' miRNA: 3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 33152 | 0.67 | 0.598556 |
Target: 5'- cGACGcuauucaagaccugcAAGCCCGCgGC-CUGCGCGAc-- -3' miRNA: 3'- -CUGC---------------UUUGGGCG-UGcGACGCGCUuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 35575 | 0.67 | 0.616635 |
Target: 5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3' miRNA: 3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 10951 | 0.67 | 0.627956 |
Target: 5'- -uUGAGGCCCuGcCACGCUGCGUa---- -3' miRNA: 3'- cuGCUUUGGG-C-GUGCGACGCGcuuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 8174 | 0.66 | 0.63928 |
Target: 5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3' miRNA: 3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 6264 | 0.66 | 0.650598 |
Target: 5'- uGCGGuuGAUCUGCGCGCUGgGCa---- -3' miRNA: 3'- cUGCU--UUGGGCGUGCGACgCGcuuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 21570 | 0.66 | 0.650598 |
Target: 5'- --gGAAGCCgGCACGaugcuuUGCuGUGAAUCg -3' miRNA: 3'- cugCUUUGGgCGUGCg-----ACG-CGCUUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 14218 | 0.66 | 0.650598 |
Target: 5'- --gGAAACcauCCGCGCGCUGCcCGAc-- -3' miRNA: 3'- cugCUUUG---GGCGUGCGACGcGCUuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 39001 | 0.66 | 0.65851 |
Target: 5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuauUCg -3' miRNA: 3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 39034 | 0.66 | 0.661898 |
Target: 5'- uGGCGGGA-CUGCGCGgUGUGCGGc-- -3' miRNA: 3'- -CUGCUUUgGGCGUGCgACGCGCUuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 14053 | 0.66 | 0.661898 |
Target: 5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3' miRNA: 3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 9195 | 0.66 | 0.661898 |
Target: 5'- cGACGuuGGCCUGCucgGCgGCGCGGcgCa -3' miRNA: 3'- -CUGCu-UUGGGCGug-CGaCGCGCUuaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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