miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26882 3' -54.5 NC_005809.1 + 20584 1.09 0.000832
Target:  5'- cGACGAAACCCGCACGCUGCGCGAAUCc -3'
miRNA:   3'- -CUGCUUUGGGCGUGCGACGCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 29551 0.77 0.171013
Target:  5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3'
miRNA:   3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 30363 0.74 0.264296
Target:  5'- cGCGAGaACCCGC-CGCUGCuguaggGUGggUCg -3'
miRNA:   3'- cUGCUU-UGGGCGuGCGACG------CGCuuAG- -5'
26882 3' -54.5 NC_005809.1 + 17287 0.73 0.285822
Target:  5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3'
miRNA:   3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 20040 0.73 0.285822
Target:  5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3'
miRNA:   3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5'
26882 3' -54.5 NC_005809.1 + 32169 0.73 0.296332
Target:  5'- uGGCGAGGCCaucgGCGCGCUGCaucacccggacaucgGCGAcAUCg -3'
miRNA:   3'- -CUGCUUUGGg---CGUGCGACG---------------CGCU-UAG- -5'
26882 3' -54.5 NC_005809.1 + 10851 0.73 0.300927
Target:  5'- aGGCGugaaaAAGCCCGCGCGCgGCGgGcuGGUCa -3'
miRNA:   3'- -CUGC-----UUUGGGCGUGCGaCGCgC--UUAG- -5'
26882 3' -54.5 NC_005809.1 + 35760 0.72 0.324727
Target:  5'- cGACGAAACCCGCGCcgugucccugGCUGaccagGCG-GUCa -3'
miRNA:   3'- -CUGCUUUGGGCGUG----------CGACg----CGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 14852 0.72 0.332966
Target:  5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3'
miRNA:   3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5'
26882 3' -54.5 NC_005809.1 + 16779 0.72 0.341356
Target:  5'- aACGAuACCgaGCGCGCcGCGCGcAUCg -3'
miRNA:   3'- cUGCUuUGGg-CGUGCGaCGCGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 9484 0.71 0.385568
Target:  5'- gGGCGAGGauguaggccgCCGCGuCGCUGCGCGAc-- -3'
miRNA:   3'- -CUGCUUUg---------GGCGU-GCGACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 17904 0.71 0.394853
Target:  5'- gGACGugGCCCGCG-GCggGCGCGAc-- -3'
miRNA:   3'- -CUGCuuUGGGCGUgCGa-CGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 36831 0.7 0.423559
Target:  5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3'
miRNA:   3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 28895 0.7 0.433402
Target:  5'- cGACGAcAUCCuCACGgUGCGCG-GUCa -3'
miRNA:   3'- -CUGCUuUGGGcGUGCgACGCGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 17487 0.7 0.443377
Target:  5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3'
miRNA:   3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5'
26882 3' -54.5 NC_005809.1 + 24776 0.7 0.452463
Target:  5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3'
miRNA:   3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5'
26882 3' -54.5 NC_005809.1 + 27969 0.7 0.453479
Target:  5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3'
miRNA:   3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 22479 0.69 0.474051
Target:  5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3'
miRNA:   3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5'
26882 3' -54.5 NC_005809.1 + 17999 0.69 0.502541
Target:  5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3'
miRNA:   3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5'
26882 3' -54.5 NC_005809.1 + 32287 0.68 0.527384
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.