Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26882 | 3' | -54.5 | NC_005809.1 | + | 220 | 0.67 | 0.59292 |
Target: 5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3' miRNA: 3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 4488 | 0.68 | 0.527384 |
Target: 5'- cGACGAAACCgccggaUGCGCGCgGCGCc---- -3' miRNA: 3'- -CUGCUUUGG------GCGUGCGaCGCGcuuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 5611 | 0.67 | 0.582799 |
Target: 5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3' miRNA: 3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 6264 | 0.66 | 0.650598 |
Target: 5'- uGCGGuuGAUCUGCGCGCUGgGCa---- -3' miRNA: 3'- cUGCU--UUGGGCGUGCGACgCGcuuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 8174 | 0.66 | 0.63928 |
Target: 5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3' miRNA: 3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 9195 | 0.66 | 0.661898 |
Target: 5'- cGACGuuGGCCUGCucgGCgGCGCGGcgCa -3' miRNA: 3'- -CUGCu-UUGGGCGug-CGaCGCGCUuaG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 9484 | 0.71 | 0.385568 |
Target: 5'- gGGCGAGGauguaggccgCCGCGuCGCUGCGCGAc-- -3' miRNA: 3'- -CUGCUUUg---------GGCGU-GCGACGCGCUuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 10851 | 0.73 | 0.300927 |
Target: 5'- aGGCGugaaaAAGCCCGCGCGCgGCGgGcuGGUCa -3' miRNA: 3'- -CUGC-----UUUGGGCGUGCGaCGCgC--UUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 10951 | 0.67 | 0.627956 |
Target: 5'- -uUGAGGCCCuGcCACGCUGCGUa---- -3' miRNA: 3'- cuGCUUUGGG-C-GUGCGACGCGcuuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 12132 | 0.66 | 0.695574 |
Target: 5'- uGGCGcGACgCGCcacGCGCUGCGCu---- -3' miRNA: 3'- -CUGCuUUGgGCG---UGCGACGCGcuuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 12193 | 0.66 | 0.684397 |
Target: 5'- aACGAAACCgGCccGCGCUGCcuGCcccuGGUCg -3' miRNA: 3'- cUGCUUUGGgCG--UGCGACG--CGc---UUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 12384 | 0.66 | 0.673168 |
Target: 5'- cGGCGAGucgauGCCUGCGCGCuUGUauGCGGc-- -3' miRNA: 3'- -CUGCUU-----UGGGCGUGCG-ACG--CGCUuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 13895 | 0.66 | 0.695574 |
Target: 5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3' miRNA: 3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 14053 | 0.66 | 0.661898 |
Target: 5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3' miRNA: 3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 14218 | 0.66 | 0.650598 |
Target: 5'- --gGAAACcauCCGCGCGCUGCcCGAc-- -3' miRNA: 3'- cugCUUUG---GGCGUGCGACGcGCUuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 14771 | 0.68 | 0.571595 |
Target: 5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3' miRNA: 3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 14852 | 0.72 | 0.332966 |
Target: 5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3' miRNA: 3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 16779 | 0.72 | 0.341356 |
Target: 5'- aACGAuACCgaGCGCGCcGCGCGcAUCg -3' miRNA: 3'- cUGCUuUGGg-CGUGCGaCGCGCuUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 17287 | 0.73 | 0.285822 |
Target: 5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3' miRNA: 3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5' |
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26882 | 3' | -54.5 | NC_005809.1 | + | 17487 | 0.7 | 0.443377 |
Target: 5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3' miRNA: 3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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