miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26882 3' -54.5 NC_005809.1 + 30261 0.66 0.695574
Target:  5'- --aGAuAGCUgCGCugGUcGCGCGAGUCg -3'
miRNA:   3'- cugCU-UUGG-GCGugCGaCGCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 36096 0.66 0.661898
Target:  5'- uGCG-GGCCUGCGCGgcgugcaguucCUGCGCGAc-- -3'
miRNA:   3'- cUGCuUUGGGCGUGC-----------GACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 9195 0.66 0.661898
Target:  5'- cGACGuuGGCCUGCucgGCgGCGCGGcgCa -3'
miRNA:   3'- -CUGCu-UUGGGCGug-CGaCGCGCUuaG- -5'
26882 3' -54.5 NC_005809.1 + 14053 0.66 0.661898
Target:  5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3'
miRNA:   3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5'
26882 3' -54.5 NC_005809.1 + 39034 0.66 0.661898
Target:  5'- uGGCGGGA-CUGCGCGgUGUGCGGc-- -3'
miRNA:   3'- -CUGCUUUgGGCGUGCgACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 12384 0.66 0.673168
Target:  5'- cGGCGAGucgauGCCUGCGCGCuUGUauGCGGc-- -3'
miRNA:   3'- -CUGCUU-----UGGGCGUGCG-ACG--CGCUuag -5'
26882 3' -54.5 NC_005809.1 + 17748 0.66 0.673168
Target:  5'- uGGCGAAACCC-CAgGUgUGCaguucgagcaGCGAGUCg -3'
miRNA:   3'- -CUGCUUUGGGcGUgCG-ACG----------CGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 24149 0.66 0.683277
Target:  5'- cGCGccuGGCCCaGCGCcucgacgGCUGCGCGcuUCg -3'
miRNA:   3'- cUGCu--UUGGG-CGUG-------CGACGCGCuuAG- -5'
26882 3' -54.5 NC_005809.1 + 12193 0.66 0.684397
Target:  5'- aACGAAACCgGCccGCGCUGCcuGCcccuGGUCg -3'
miRNA:   3'- cUGCUUUGGgCG--UGCGACG--CGc---UUAG- -5'
26882 3' -54.5 NC_005809.1 + 6264 0.66 0.650598
Target:  5'- uGCGGuuGAUCUGCGCGCUGgGCa---- -3'
miRNA:   3'- cUGCU--UUGGGCGUGCGACgCGcuuag -5'
26882 3' -54.5 NC_005809.1 + 8174 0.66 0.63928
Target:  5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3'
miRNA:   3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5'
26882 3' -54.5 NC_005809.1 + 35575 0.67 0.616635
Target:  5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3'
miRNA:   3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5'
26882 3' -54.5 NC_005809.1 + 17287 0.73 0.285822
Target:  5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3'
miRNA:   3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 14852 0.72 0.332966
Target:  5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3'
miRNA:   3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5'
26882 3' -54.5 NC_005809.1 + 36831 0.7 0.423559
Target:  5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3'
miRNA:   3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 22479 0.69 0.474051
Target:  5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3'
miRNA:   3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5'
26882 3' -54.5 NC_005809.1 + 32287 0.68 0.527384
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5'
26882 3' -54.5 NC_005809.1 + 33211 0.68 0.537232
Target:  5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3'
miRNA:   3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 33331 0.68 0.537232
Target:  5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3'
miRNA:   3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 26031 0.68 0.53833
Target:  5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3'
miRNA:   3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.