miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26882 3' -54.5 NC_005809.1 + 42337 0.66 0.684397
Target:  5'- cGGgGAAACCCaGCGCGCcaaugccgaggUGCGCcAGUUc -3'
miRNA:   3'- -CUgCUUUGGG-CGUGCG-----------ACGCGcUUAG- -5'
26882 3' -54.5 NC_005809.1 + 39034 0.66 0.661898
Target:  5'- uGGCGGGA-CUGCGCGgUGUGCGGc-- -3'
miRNA:   3'- -CUGCUUUgGGCGUGCgACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 39001 0.66 0.65851
Target:  5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuauUCg -3'
miRNA:   3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5'
26882 3' -54.5 NC_005809.1 + 36831 0.7 0.423559
Target:  5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3'
miRNA:   3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 36096 0.66 0.661898
Target:  5'- uGCG-GGCCUGCGCGgcgugcaguucCUGCGCGAc-- -3'
miRNA:   3'- cUGCuUUGGGCGUGC-----------GACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 35760 0.72 0.324727
Target:  5'- cGACGAAACCCGCGCcgugucccugGCUGaccagGCG-GUCa -3'
miRNA:   3'- -CUGCUUUGGGCGUG----------CGACg----CGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 35575 0.67 0.616635
Target:  5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3'
miRNA:   3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5'
26882 3' -54.5 NC_005809.1 + 33331 0.68 0.537232
Target:  5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3'
miRNA:   3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 33211 0.68 0.537232
Target:  5'- uGGCGAAuCCgGCAcggccacCGCUG-GCGAAUCc -3'
miRNA:   3'- -CUGCUUuGGgCGU-------GCGACgCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 33152 0.67 0.598556
Target:  5'- cGACGcuauucaagaccugcAAGCCCGCgGC-CUGCGCGAc-- -3'
miRNA:   3'- -CUGC---------------UUUGGGCG-UGcGACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 32779 0.66 0.695574
Target:  5'- cGGCGAAguccGCCCucgGCACcucgcugguGCUGCGCGucugccGGUCg -3'
miRNA:   3'- -CUGCUU----UGGG---CGUG---------CGACGCGC------UUAG- -5'
26882 3' -54.5 NC_005809.1 + 32287 0.68 0.527384
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5'
26882 3' -54.5 NC_005809.1 + 32169 0.73 0.296332
Target:  5'- uGGCGAGGCCaucgGCGCGCUGCaucacccggacaucgGCGAcAUCg -3'
miRNA:   3'- -CUGCUUUGGg---CGUGCGACG---------------CGCU-UAG- -5'
26882 3' -54.5 NC_005809.1 + 31881 0.66 0.673168
Target:  5'- -cCGAGGCCgUGCGCGCUGC-CG--UCa -3'
miRNA:   3'- cuGCUUUGG-GCGUGCGACGcGCuuAG- -5'
26882 3' -54.5 NC_005809.1 + 30363 0.74 0.264296
Target:  5'- cGCGAGaACCCGC-CGCUGCuguaggGUGggUCg -3'
miRNA:   3'- cUGCUU-UGGGCGuGCGACG------CGCuuAG- -5'
26882 3' -54.5 NC_005809.1 + 30261 0.66 0.695574
Target:  5'- --aGAuAGCUgCGCugGUcGCGCGAGUCg -3'
miRNA:   3'- cugCU-UUGG-GCGugCGaCGCGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 29551 0.77 0.171013
Target:  5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3'
miRNA:   3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5'
26882 3' -54.5 NC_005809.1 + 28895 0.7 0.433402
Target:  5'- cGACGAcAUCCuCACGgUGCGCG-GUCa -3'
miRNA:   3'- -CUGCUuUGGGcGUGCgACGCGCuUAG- -5'
26882 3' -54.5 NC_005809.1 + 27969 0.7 0.453479
Target:  5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3'
miRNA:   3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5'
26882 3' -54.5 NC_005809.1 + 27810 0.66 0.673168
Target:  5'- --aGAucGACaCCGaCACGCUGCGCGc--- -3'
miRNA:   3'- cugCU--UUG-GGC-GUGCGACGCGCuuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.