miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26903 5' -58.4 NC_005809.1 + 604 0.66 0.412499
Target:  5'- cCGCCuGCGGgucGGCCagcagcGCCGUGGa- -3'
miRNA:   3'- aGCGGuCGCCa--CCGGca----CGGCAUUaa -5'
26903 5' -58.4 NC_005809.1 + 3598 0.68 0.325078
Target:  5'- cCGCCAGUGuUGGCCGUGUauucgGAUg -3'
miRNA:   3'- aGCGGUCGCcACCGGCACGgca--UUAa -5'
26903 5' -58.4 NC_005809.1 + 3739 0.69 0.286821
Target:  5'- aCGCCGGUGGUGGgCacgucgGUGCCGc---- -3'
miRNA:   3'- aGCGGUCGCCACCgG------CACGGCauuaa -5'
26903 5' -58.4 NC_005809.1 + 4273 0.71 0.209594
Target:  5'- gCGCCGGCauGGUgauGGCCGUGUCGgcGg- -3'
miRNA:   3'- aGCGGUCG--CCA---CCGGCACGGCauUaa -5'
26903 5' -58.4 NC_005809.1 + 4449 0.71 0.227041
Target:  5'- cCGCCAGCGGUGGCa---CCGUcAUg -3'
miRNA:   3'- aGCGGUCGCCACCGgcacGGCAuUAa -5'
26903 5' -58.4 NC_005809.1 + 4800 0.67 0.37316
Target:  5'- aCGCCGGCuGGcgcugcgggauugcUGGCCGgcgacaggucGCCGUAGUc -3'
miRNA:   3'- aGCGGUCG-CC--------------ACCGGCa---------CGGCAUUAa -5'
26903 5' -58.4 NC_005809.1 + 5809 0.69 0.294179
Target:  5'- gCGCCAGCGGauagucgGGCauggCGUGCCGc---- -3'
miRNA:   3'- aGCGGUCGCCa------CCG----GCACGGCauuaa -5'
26903 5' -58.4 NC_005809.1 + 5897 0.7 0.239344
Target:  5'- gUCGCCAGC-GUGGUgagUGUGCCGccggGAUUg -3'
miRNA:   3'- -AGCGGUCGcCACCG---GCACGGCa---UUAA- -5'
26903 5' -58.4 NC_005809.1 + 8509 0.68 0.325078
Target:  5'- aUGCagauGCGGgugGGCCGUGgCGUAGg- -3'
miRNA:   3'- aGCGgu--CGCCa--CCGGCACgGCAUUaa -5'
26903 5' -58.4 NC_005809.1 + 8925 1.06 0.000509
Target:  5'- cUCGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCAUUAA- -5'
26903 5' -58.4 NC_005809.1 + 8950 1.01 0.001152
Target:  5'- nUGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- aGCGGUCGCCACCGGCACGGCAUUAA- -5'
26903 5' -58.4 NC_005809.1 + 8974 0.8 0.050584
Target:  5'- nUGCCAGC-GUGGCCGUGCCGcGAUn -3'
miRNA:   3'- aGCGGUCGcCACCGGCACGGCaUUAa -5'
26903 5' -58.4 NC_005809.1 + 8998 0.92 0.00624
Target:  5'- -aGCCAGCGGUGGCCGUGCCGg---- -3'
miRNA:   3'- agCGGUCGCCACCGGCACGGCauuaa -5'
26903 5' -58.4 NC_005809.1 + 9020 1.06 0.000494
Target:  5'- uUCGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCAUUAA- -5'
26903 5' -58.4 NC_005809.1 + 9045 0.95 0.003214
Target:  5'- nUGCCAGCGGUGGCCGUGCCGUAn-- -3'
miRNA:   3'- aGCGGUCGCCACCGGCACGGCAUuaa -5'
26903 5' -58.4 NC_005809.1 + 9068 1.03 0.000904
Target:  5'- aUUGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCAUUAA- -5'
26903 5' -58.4 NC_005809.1 + 9093 0.92 0.005701
Target:  5'- nUGCCAGCGGUGGCCGUGCCGg---- -3'
miRNA:   3'- aGCGGUCGCCACCGGCACGGCauuaa -5'
26903 5' -58.4 NC_005809.1 + 9116 0.98 0.002107
Target:  5'- uUCGCCAGCGGUGGCCGUGCCGcGAUa -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCaUUAa -5'
26903 5' -58.4 NC_005809.1 + 9142 0.92 0.00624
Target:  5'- -aGCCAGCGGUGGCCGUGCCGg---- -3'
miRNA:   3'- agCGGUCGCCACCGGCACGGCauuaa -5'
26903 5' -58.4 NC_005809.1 + 9164 1.06 0.000494
Target:  5'- uUCGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCAUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.