miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26903 5' -58.4 NC_005809.1 + 4273 0.71 0.209594
Target:  5'- gCGCCGGCauGGUgauGGCCGUGUCGgcGg- -3'
miRNA:   3'- aGCGGUCG--CCA---CCGGCACGGCauUaa -5'
26903 5' -58.4 NC_005809.1 + 37712 0.66 0.451308
Target:  5'- cUCGCCGGCGaGgauuggaagcUGGCCGcuuuCCGUGAa- -3'
miRNA:   3'- -AGCGGUCGC-C----------ACCGGCac--GGCAUUaa -5'
26903 5' -58.4 NC_005809.1 + 604 0.66 0.412499
Target:  5'- cCGCCuGCGGgucGGCCagcagcGCCGUGGa- -3'
miRNA:   3'- aGCGGuCGCCa--CCGGca----CGGCAUUaa -5'
26903 5' -58.4 NC_005809.1 + 19489 0.67 0.403123
Target:  5'- gUGCCGGUGGgcaGGCCGcUGCgaacCGUGGUc -3'
miRNA:   3'- aGCGGUCGCCa--CCGGC-ACG----GCAUUAa -5'
26903 5' -58.4 NC_005809.1 + 4800 0.67 0.37316
Target:  5'- aCGCCGGCuGGcgcugcgggauugcUGGCCGgcgacaggucGCCGUAGUc -3'
miRNA:   3'- aGCGGUCG-CC--------------ACCGGCa---------CGGCAUUAa -5'
26903 5' -58.4 NC_005809.1 + 29311 0.68 0.349795
Target:  5'- cUUGCCcagcacuucaaGGCGGUGGCgGUcGCCGg---- -3'
miRNA:   3'- -AGCGG-----------UCGCCACCGgCA-CGGCauuaa -5'
26903 5' -58.4 NC_005809.1 + 11173 0.68 0.34141
Target:  5'- gUUGCguGCGcUGGUCG-GCCGUGGUg -3'
miRNA:   3'- -AGCGguCGCcACCGGCaCGGCAUUAa -5'
26903 5' -58.4 NC_005809.1 + 3598 0.68 0.325078
Target:  5'- cCGCCAGUGuUGGCCGUGUauucgGAUg -3'
miRNA:   3'- aGCGGUCGCcACCGGCACGgca--UUAa -5'
26903 5' -58.4 NC_005809.1 + 21894 0.68 0.321882
Target:  5'- gUCGCCcaaggcuuccauuGCGG-GGCUGuUGCCGUAGa- -3'
miRNA:   3'- -AGCGGu------------CGCCaCCGGC-ACGGCAUUaa -5'
26903 5' -58.4 NC_005809.1 + 16519 0.71 0.215278
Target:  5'- gUGCCGGUGGUcuGGCCGauauaGCCGUAc-- -3'
miRNA:   3'- aGCGGUCGCCA--CCGGCa----CGGCAUuaa -5'
26903 5' -58.4 NC_005809.1 + 18366 0.71 0.221093
Target:  5'- uUUGCCGGCGGcgagguUGGCCuUGCCGa---- -3'
miRNA:   3'- -AGCGGUCGCC------ACCGGcACGGCauuaa -5'
26903 5' -58.4 NC_005809.1 + 4449 0.71 0.227041
Target:  5'- cCGCCAGCGGUGGCa---CCGUcAUg -3'
miRNA:   3'- aGCGGUCGCCACCGgcacGGCAuUAa -5'
26903 5' -58.4 NC_005809.1 + 5897 0.7 0.239344
Target:  5'- gUCGCCAGC-GUGGUgagUGUGCCGccggGAUUg -3'
miRNA:   3'- -AGCGGUCGcCACCG---GCACGGCa---UUAA- -5'
26903 5' -58.4 NC_005809.1 + 3739 0.69 0.286821
Target:  5'- aCGCCGGUGGUGGgCacgucgGUGCCGc---- -3'
miRNA:   3'- aGCGGUCGCCACCgG------CACGGCauuaa -5'
26903 5' -58.4 NC_005809.1 + 18469 0.69 0.309335
Target:  5'- gCGCCGGCGGcgucGGCCGauucguccaCCGUGAUg -3'
miRNA:   3'- aGCGGUCGCCa---CCGGCac-------GGCAUUAa -5'
26903 5' -58.4 NC_005809.1 + 9660 0.66 0.46132
Target:  5'- -aGCCAGCcGUgcaGGCCGUgGCCGcAGUUc -3'
miRNA:   3'- agCGGUCGcCA---CCGGCA-CGGCaUUAA- -5'
26903 5' -58.4 NC_005809.1 + 9164 1.06 0.000494
Target:  5'- uUCGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCAUUAA- -5'
26903 5' -58.4 NC_005809.1 + 9308 1.06 0.000494
Target:  5'- uUCGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCAUUAA- -5'
26903 5' -58.4 NC_005809.1 + 8925 1.06 0.000509
Target:  5'- cUCGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCAUUAA- -5'
26903 5' -58.4 NC_005809.1 + 9068 1.03 0.000904
Target:  5'- aUUGCCAGCGGUGGCCGUGCCGUAAUUg -3'
miRNA:   3'- -AGCGGUCGCCACCGGCACGGCAUUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.