miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26905 5' -55.9 NC_005809.1 + 34580 0.66 0.661451
Target:  5'- ---gGCaCGUCCgaCGCCGugGUGcugcuGCCUg -3'
miRNA:   3'- acuaUG-GCAGGa-GCGGCugCAU-----CGGG- -5'
26905 5' -55.9 NC_005809.1 + 23333 0.66 0.661451
Target:  5'- gUGGUaGCCGcgcaauucgacggCCUCGCCGccgaugaacacggugGCGU-GCCCg -3'
miRNA:   3'- -ACUA-UGGCa------------GGAGCGGC---------------UGCAuCGGG- -5'
26905 5' -55.9 NC_005809.1 + 1859 0.66 0.654839
Target:  5'- ---cGCCGUCUugcagguucagcccgUgGCCGGCGcUGGCCg -3'
miRNA:   3'- acuaUGGCAGG---------------AgCGGCUGC-AUCGGg -5'
26905 5' -55.9 NC_005809.1 + 25082 0.66 0.650427
Target:  5'- gGAcacgACCaaGUUCUCGCCGcuguuCGUgcaGGCCCu -3'
miRNA:   3'- aCUa---UGG--CAGGAGCGGCu----GCA---UCGGG- -5'
26905 5' -55.9 NC_005809.1 + 14843 0.66 0.639388
Target:  5'- cGAUGCCGUuggcggCCagCGCCGcACGcugGGCgCCu -3'
miRNA:   3'- aCUAUGGCA------GGa-GCGGC-UGCa--UCG-GG- -5'
26905 5' -55.9 NC_005809.1 + 32637 0.66 0.628341
Target:  5'- cGGUcGCUGUCCUgucgaaguucggCGCCGcgaagcugcccgACGUgaAGCCCg -3'
miRNA:   3'- aCUA-UGGCAGGA------------GCGGC------------UGCA--UCGGG- -5'
26905 5' -55.9 NC_005809.1 + 27814 0.66 0.628341
Target:  5'- ---aGCaCGUCCUCGCgCG-CGcuGCCCg -3'
miRNA:   3'- acuaUG-GCAGGAGCG-GCuGCauCGGG- -5'
26905 5' -55.9 NC_005809.1 + 6422 0.66 0.628341
Target:  5'- cGAacUCGUCCUCGCUcGCGacaccaccGCCCg -3'
miRNA:   3'- aCUauGGCAGGAGCGGcUGCau------CGGG- -5'
26905 5' -55.9 NC_005809.1 + 19271 0.66 0.627236
Target:  5'- cGAUGCUGgaaUCGCCGuagaacaGCGUGGUCg -3'
miRNA:   3'- aCUAUGGCaggAGCGGC-------UGCAUCGGg -5'
26905 5' -55.9 NC_005809.1 + 28037 0.66 0.617298
Target:  5'- cGcUGuuGUCCggCGCCGgcgACGUGGCUg -3'
miRNA:   3'- aCuAUggCAGGa-GCGGC---UGCAUCGGg -5'
26905 5' -55.9 NC_005809.1 + 16925 0.66 0.606268
Target:  5'- aUGAcGCCGgcagaaCUCGCCGAgGUGGaCgCg -3'
miRNA:   3'- -ACUaUGGCag----GAGCGGCUgCAUC-GgG- -5'
26905 5' -55.9 NC_005809.1 + 17274 0.66 0.606268
Target:  5'- gGAUauuGCCGUCCacgaaGCCGGCGccgcgGGCgCg -3'
miRNA:   3'- aCUA---UGGCAGGag---CGGCUGCa----UCGgG- -5'
26905 5' -55.9 NC_005809.1 + 24599 0.66 0.606268
Target:  5'- ---gGCgUGUCCUUGCCGGgGUAGgUCa -3'
miRNA:   3'- acuaUG-GCAGGAGCGGCUgCAUCgGG- -5'
26905 5' -55.9 NC_005809.1 + 28878 0.66 0.606268
Target:  5'- -----aCGUCCUCGCUgcuGGCGUAGUUg -3'
miRNA:   3'- acuaugGCAGGAGCGG---CUGCAUCGGg -5'
26905 5' -55.9 NC_005809.1 + 40319 0.66 0.606268
Target:  5'- gUGGUGCgCGUCgaacUGCCGGCcaaGGCCCg -3'
miRNA:   3'- -ACUAUG-GCAGga--GCGGCUGca-UCGGG- -5'
26905 5' -55.9 NC_005809.1 + 24438 0.67 0.584283
Target:  5'- cGGUGCCGcgcgcggCCUcggcgacauugaCGCCGACGaccugcugcuUGGCCUg -3'
miRNA:   3'- aCUAUGGCa------GGA------------GCGGCUGC----------AUCGGG- -5'
26905 5' -55.9 NC_005809.1 + 18119 0.67 0.573348
Target:  5'- ---cGCCGUCCgguaCGUCGAacuUGUcGCCCg -3'
miRNA:   3'- acuaUGGCAGGa---GCGGCU---GCAuCGGG- -5'
26905 5' -55.9 NC_005809.1 + 34980 0.67 0.566809
Target:  5'- -cGUGCUGUCCaccgUCGCCGACGacuucguggacguGUCCa -3'
miRNA:   3'- acUAUGGCAGG----AGCGGCUGCau-----------CGGG- -5'
26905 5' -55.9 NC_005809.1 + 2036 0.67 0.56246
Target:  5'- -cAUACCGgccgCCUCGgCGACGauggauucaagGGCCUg -3'
miRNA:   3'- acUAUGGCa---GGAGCgGCUGCa----------UCGGG- -5'
26905 5' -55.9 NC_005809.1 + 7289 0.67 0.56246
Target:  5'- cGggGCCGUagugCUCGCgGAUGgcGCCg -3'
miRNA:   3'- aCuaUGGCAg---GAGCGgCUGCauCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.