miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26906 3' -54.7 NC_005809.1 + 38700 0.66 0.692262
Target:  5'- aCCUCGUCGaGCGcgucAGGaaGCUGGGc-- -3'
miRNA:   3'- gGGAGCAGC-CGC----UUCagCGACCUuag -5'
26906 3' -54.7 NC_005809.1 + 8625 0.66 0.670177
Target:  5'- uUCUCGgccgcugcggUGGCGAGGUCGCcGGccuUCa -3'
miRNA:   3'- gGGAGCa---------GCCGCUUCAGCGaCCuu-AG- -5'
26906 3' -54.7 NC_005809.1 + 8160 0.67 0.659073
Target:  5'- aCCUCGaugaugCGGCccagGAAGgCGCUGGcGUCc -3'
miRNA:   3'- gGGAGCa-----GCCG----CUUCaGCGACCuUAG- -5'
26906 3' -54.7 NC_005809.1 + 20606 0.67 0.647944
Target:  5'- uCCUUCGccaGGCGgcGUCGCaGGucgguGUCg -3'
miRNA:   3'- -GGGAGCag-CCGCuuCAGCGaCCu----UAG- -5'
26906 3' -54.7 NC_005809.1 + 2018 0.67 0.625652
Target:  5'- gCgCUCGcUGGCGAAGUCGCgcaGGcGAUa -3'
miRNA:   3'- -GgGAGCaGCCGCUUCAGCGa--CC-UUAg -5'
26906 3' -54.7 NC_005809.1 + 23208 0.68 0.590065
Target:  5'- gCCUCGUCGGUGAAuucggccucggccucGgccaccgaccgcgccUCGCUGGGGa- -3'
miRNA:   3'- gGGAGCAGCCGCUU---------------C---------------AGCGACCUUag -5'
26906 3' -54.7 NC_005809.1 + 20455 0.68 0.576799
Target:  5'- gCCCUCGuuccgguucccuUCGGCGAAGgccauagccaucgCGUUGGuGUUg -3'
miRNA:   3'- -GGGAGC------------AGCCGCUUCa------------GCGACCuUAG- -5'
26906 3' -54.7 NC_005809.1 + 18409 0.69 0.526694
Target:  5'- gCCaCGUCGGCGAAGguggCGUUGuccgccGAGUCc -3'
miRNA:   3'- gGGaGCAGCCGCUUCa---GCGAC------CUUAG- -5'
26906 3' -54.7 NC_005809.1 + 1189 0.69 0.526694
Target:  5'- gCCgggGUCGGCcGGGUUGUUGGAAUa -3'
miRNA:   3'- gGGag-CAGCCGcUUCAGCGACCUUAg -5'
26906 3' -54.7 NC_005809.1 + 28880 0.7 0.474202
Target:  5'- gUCCUCGcugcUGGCGuAGUUGCUGGccGUCg -3'
miRNA:   3'- -GGGAGCa---GCCGCuUCAGCGACCu-UAG- -5'
26906 3' -54.7 NC_005809.1 + 4612 0.7 0.443992
Target:  5'- gCCUCGgcgaugaugUCGGCGggGaUGCUGGGccacgcugcGUCg -3'
miRNA:   3'- gGGAGC---------AGCCGCuuCaGCGACCU---------UAG- -5'
26906 3' -54.7 NC_005809.1 + 10741 0.71 0.396157
Target:  5'- uUCUUCGUCGGUGAGGgugCGCaGGu-UCa -3'
miRNA:   3'- -GGGAGCAGCCGCUUCa--GCGaCCuuAG- -5'
26906 3' -54.7 NC_005809.1 + 19259 0.72 0.369096
Target:  5'- aCUUC-UCGGCGucGaUGCUGGAAUCg -3'
miRNA:   3'- gGGAGcAGCCGCuuCaGCGACCUUAG- -5'
26906 3' -54.7 NC_005809.1 + 5748 0.73 0.318884
Target:  5'- -gUUUGUCGGCG-AGUUGCUGGAu-- -3'
miRNA:   3'- ggGAGCAGCCGCuUCAGCGACCUuag -5'
26906 3' -54.7 NC_005809.1 + 8240 1.12 0.000568
Target:  5'- gCCCUCGUCGGCGAAGUCGCUGGAAUCa -3'
miRNA:   3'- -GGGAGCAGCCGCUUCAGCGACCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.