Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26907 | 3' | -60 | NC_005809.1 | + | 6506 | 0.66 | 0.420977 |
Target: 5'- uGGuuGGCgAGCAGUuucUUGGCgaguuuUUCGGg- -3' miRNA: 3'- -CCggCCGgUCGUCA---AGCCG------AAGCCgg -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 4261 | 0.66 | 0.402593 |
Target: 5'- uGCCGGCCGuCAGcgcCGGCauggugaUGGCCg -3' miRNA: 3'- cCGGCCGGUcGUCaa-GCCGaa-----GCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 33196 | 0.66 | 0.402593 |
Target: 5'- cGGCaCGGCCAccGCuGgcgaaucCGGCa-CGGCCa -3' miRNA: 3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 6802 | 0.66 | 0.405318 |
Target: 5'- cGCCuGGUCAGCcagggacacggcgcgGGUuucgucguugcccUCGGCgaCGGCCu -3' miRNA: 3'- cCGG-CCGGUCG---------------UCA-------------AGCCGaaGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 16312 | 0.66 | 0.411722 |
Target: 5'- aGCCgaccaGGCCGGCGGgugccCGuGCcUUCGGCg -3' miRNA: 3'- cCGG-----CCGGUCGUCaa---GC-CG-AAGCCGg -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 19344 | 0.66 | 0.393595 |
Target: 5'- aGGCgCGGUCGGUGGccgaGGCcgaGGCCg -3' miRNA: 3'- -CCG-GCCGGUCGUCaag-CCGaagCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 27350 | 0.66 | 0.393595 |
Target: 5'- aGGCCgGGCCGaccucGCAGcacUCGuccaGCcaUUCGGCCa -3' miRNA: 3'- -CCGG-CCGGU-----CGUCa--AGC----CG--AAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 32235 | 0.66 | 0.402593 |
Target: 5'- aGGCacacGCC-GCAGcgaCGGCUaCGGCCu -3' miRNA: 3'- -CCGgc--CGGuCGUCaa-GCCGAaGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 9275 | 0.66 | 0.42753 |
Target: 5'- cGGUCGGcCCGGUAcacCGGCUgcgcauugacuuccUCGGCg -3' miRNA: 3'- -CCGGCC-GGUCGUcaaGCCGA--------------AGCCGg -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 8413 | 0.66 | 0.420977 |
Target: 5'- cGGCCagGGCCGuGCGcuugUCuacggccuugaGGCUUUGGCCc -3' miRNA: 3'- -CCGG--CCGGU-CGUca--AG-----------CCGAAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 30142 | 0.66 | 0.393595 |
Target: 5'- cGCCGGCCuGCAccgcgUCGGacaucagCGGCa -3' miRNA: 3'- cCGGCCGGuCGUca---AGCCgaa----GCCGg -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 36189 | 0.66 | 0.430356 |
Target: 5'- gGGCCGGCCGGCcug-CGcCUgauugccgacgUgGGCCg -3' miRNA: 3'- -CCGGCCGGUCGucaaGCcGA-----------AgCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 33340 | 0.66 | 0.402593 |
Target: 5'- cGGCaCGGCCAccGCuGgcgaaucCGGCa-CGGCCa -3' miRNA: 3'- -CCG-GCCGGU--CGuCaa-----GCCGaaGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 29392 | 0.66 | 0.393595 |
Target: 5'- cGCCGGCCAagggcgccCAGcgCGGCcgacacUGGCCg -3' miRNA: 3'- cCGGCCGGUc-------GUCaaGCCGaa----GCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 13720 | 0.66 | 0.420977 |
Target: 5'- uGGCgCGGCgCugGGaCAGcUUCGGCaagucCGGCCg -3' miRNA: 3'- -CCG-GCCG-G--UC-GUC-AAGCCGaa---GCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 15299 | 0.66 | 0.411722 |
Target: 5'- cGCgCGGCgAacuGCGGUUCauuGCcUCGGCCa -3' miRNA: 3'- cCG-GCCGgU---CGUCAAGc--CGaAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 13856 | 0.66 | 0.393595 |
Target: 5'- cGCCuGCCGGaa----GGUUUCGGCCu -3' miRNA: 3'- cCGGcCGGUCgucaagCCGAAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 18100 | 0.66 | 0.402593 |
Target: 5'- uGGCgcaGGCCaagcAGCAGgucgUCGGCgUCaaugucgccgaGGCCg -3' miRNA: 3'- -CCGg--CCGG----UCGUCa---AGCCGaAG-----------CCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 14977 | 0.66 | 0.384728 |
Target: 5'- cGCCGGUCGcCAGaaUGGCgUCGGCa -3' miRNA: 3'- cCGGCCGGUcGUCaaGCCGaAGCCGg -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 32823 | 0.66 | 0.411722 |
Target: 5'- cGGUCGGacuacaCCAGCcGcaaCGGCUUCgccuGGCCg -3' miRNA: 3'- -CCGGCC------GGUCGuCaa-GCCGAAG----CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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