Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26907 | 3' | -60 | NC_005809.1 | + | 7432 | 1.12 | 0.000139 |
Target: 5'- uGGCCGGCCAGCAGUUCGGCUUCGGCCu -3' miRNA: 3'- -CCGGCCGGUCGUCAAGCCGAAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 7858 | 0.87 | 0.01252 |
Target: 5'- aGGCgGGCUucGCGGUUCaGGCUUCGGCCg -3' miRNA: 3'- -CCGgCCGGu-CGUCAAG-CCGAAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 12009 | 0.85 | 0.017781 |
Target: 5'- cGUCGGCCAGCAGcgCGGCcgUGGCCg -3' miRNA: 3'- cCGGCCGGUCGUCaaGCCGaaGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 4093 | 0.82 | 0.032187 |
Target: 5'- aGGCCGGCCAGguGggCGGCgcugaauucgucgCGGUCg -3' miRNA: 3'- -CCGGCCGGUCguCaaGCCGaa-----------GCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 28635 | 0.79 | 0.04766 |
Target: 5'- aGGCCGGCCAguuccgcgcGCAGUgccagaUCGGUgccggCGGCCu -3' miRNA: 3'- -CCGGCCGGU---------CGUCA------AGCCGaa---GCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 1531 | 0.79 | 0.04766 |
Target: 5'- cGCCGcCCAGCAGUUCGGCcUUGGUa -3' miRNA: 3'- cCGGCcGGUCGUCAAGCCGaAGCCGg -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 5212 | 0.79 | 0.054072 |
Target: 5'- uGCUGGCCugcaaccggauacccAGCAGUUCGcGCagUUCGGCCg -3' miRNA: 3'- cCGGCCGG---------------UCGUCAAGC-CG--AAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 23202 | 0.77 | 0.071098 |
Target: 5'- aGGUCGGCCucguCGGUgaauUCGGCcUCGGCCu -3' miRNA: 3'- -CCGGCCGGuc--GUCA----AGCCGaAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 34848 | 0.76 | 0.084009 |
Target: 5'- aGCCGGCCGccgagcgugcgcuGCAGUucaUCGGCaagcCGGCCg -3' miRNA: 3'- cCGGCCGGU-------------CGUCA---AGCCGaa--GCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 6395 | 0.76 | 0.086651 |
Target: 5'- aGGCCGGCCGGCc---CGGUguagucgCGGCCc -3' miRNA: 3'- -CCGGCCGGUCGucaaGCCGaa-----GCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 14133 | 0.75 | 0.096943 |
Target: 5'- cGUCGGCCAGCGGcUUGcCUUCcGGCCg -3' miRNA: 3'- cCGGCCGGUCGUCaAGCcGAAG-CCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 8848 | 0.75 | 0.099691 |
Target: 5'- cGCgGGCCAGCGcgUUGGCcUCGGUCg -3' miRNA: 3'- cCGgCCGGUCGUcaAGCCGaAGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 32060 | 0.75 | 0.102227 |
Target: 5'- uGGCCGGCgguCAGCAGUUCGaucaagaGCa-CGGCCc -3' miRNA: 3'- -CCGGCCG---GUCGUCAAGC-------CGaaGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 7265 | 0.75 | 0.108382 |
Target: 5'- cGCCGGCCuuguGCAGcuucUCGGCggUGGUCg -3' miRNA: 3'- cCGGCCGGu---CGUCa---AGCCGaaGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 612 | 0.74 | 0.110818 |
Target: 5'- gGGUCGGCCAGCAGcgccguggacaCGGCgucCGGCg -3' miRNA: 3'- -CCGGCCGGUCGUCaa---------GCCGaa-GCCGg -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 12447 | 0.74 | 0.114567 |
Target: 5'- aGGCCGG-CGGCGuGUUCuGGCg-CGGCCu -3' miRNA: 3'- -CCGGCCgGUCGU-CAAG-CCGaaGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 22983 | 0.74 | 0.117781 |
Target: 5'- aGCCGGUCGGa--UUCGGCUuucgccuggUCGGCCu -3' miRNA: 3'- cCGGCCGGUCgucAAGCCGA---------AGCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 33754 | 0.73 | 0.130776 |
Target: 5'- cGGCUGGCCcgacccAGCAGaUCGGUacugaccggcgCGGCCg -3' miRNA: 3'- -CCGGCCGG------UCGUCaAGCCGaa---------GCCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 5100 | 0.73 | 0.138892 |
Target: 5'- cGGCCGGcCCAGCguccGGUgCGGCUggcGCCg -3' miRNA: 3'- -CCGGCC-GGUCG----UCAaGCCGAagcCGG- -5' |
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26907 | 3' | -60 | NC_005809.1 | + | 1762 | 0.73 | 0.142732 |
Target: 5'- uGGCCGGCCuGCGcc-UGGCgcgUCgGGCCg -3' miRNA: 3'- -CCGGCCGGuCGUcaaGCCGa--AG-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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