miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26907 5' -57.6 NC_005809.1 + 17857 0.66 0.479783
Target:  5'- cGUGGCCUcgucGC-CCAGGua--GGCCAGg -3'
miRNA:   3'- -UACCGGAa---CGuGGUCCugagCUGGUC- -5'
26907 5' -57.6 NC_005809.1 + 37056 0.66 0.477713
Target:  5'- -cGGCCUggaacuaccaagGCACCGaguuggcgcuauGGcacCUCGACCAGa -3'
miRNA:   3'- uaCCGGAa-----------CGUGGU------------CCu--GAGCUGGUC- -5'
26907 5' -57.6 NC_005809.1 + 40807 0.66 0.459286
Target:  5'- -cGGCCcgacGCGCCAGG-CgcaGGCCGGc -3'
miRNA:   3'- uaCCGGaa--CGUGGUCCuGag-CUGGUC- -5'
26907 5' -57.6 NC_005809.1 + 13222 0.66 0.449213
Target:  5'- -aGGCCaccgGCGCgugguucgAGGACUUGGCCGGc -3'
miRNA:   3'- uaCCGGaa--CGUGg-------UCCUGAGCUGGUC- -5'
26907 5' -57.6 NC_005809.1 + 40610 0.66 0.448212
Target:  5'- -cGuGCCUUcCcCCAGGgccgcgcGCUCGACCAGa -3'
miRNA:   3'- uaC-CGGAAcGuGGUCC-------UGAGCUGGUC- -5'
26907 5' -57.6 NC_005809.1 + 11016 0.67 0.407349
Target:  5'- uUGGCgUcgaugaacaccugcUGCACCGGGccguuCUCGGCCGc -3'
miRNA:   3'- uACCGgA--------------ACGUGGUCCu----GAGCUGGUc -5'
26907 5' -57.6 NC_005809.1 + 4576 0.67 0.391485
Target:  5'- -aGGCgCUgcucggUGCGCCAGGcgaggaacuGCUCGGCCu- -3'
miRNA:   3'- uaCCG-GA------ACGUGGUCC---------UGAGCUGGuc -5'
26907 5' -57.6 NC_005809.1 + 24485 0.67 0.391485
Target:  5'- uUGGCC-UGCGCCAGGAagUCGuagggGCUGGc -3'
miRNA:   3'- uACCGGaACGUGGUCCUg-AGC-----UGGUC- -5'
26907 5' -57.6 NC_005809.1 + 12544 0.68 0.373345
Target:  5'- cGUGGUgUgggGCACCaAGGGCgCGGCCGu -3'
miRNA:   3'- -UACCGgAa--CGUGG-UCCUGaGCUGGUc -5'
26907 5' -57.6 NC_005809.1 + 13994 0.68 0.347225
Target:  5'- cUGGCCUcgUGCugCAcaGCUUGACCAc -3'
miRNA:   3'- uACCGGA--ACGugGUccUGAGCUGGUc -5'
26907 5' -57.6 NC_005809.1 + 18461 0.68 0.338813
Target:  5'- -cGGUCgcgGCGCCGGcGGCgUCGGCCGa -3'
miRNA:   3'- uaCCGGaa-CGUGGUC-CUG-AGCUGGUc -5'
26907 5' -57.6 NC_005809.1 + 27700 0.68 0.338813
Target:  5'- -aGGCCgcGCGCCGGcagcGGCUCGccGCCGGu -3'
miRNA:   3'- uaCCGGaaCGUGGUC----CUGAGC--UGGUC- -5'
26907 5' -57.6 NC_005809.1 + 25312 0.69 0.330551
Target:  5'- -cGGCCcUGcCACCGGcGCUCGucGCCGGg -3'
miRNA:   3'- uaCCGGaAC-GUGGUCcUGAGC--UGGUC- -5'
26907 5' -57.6 NC_005809.1 + 17104 0.69 0.330551
Target:  5'- -cGGCCggGCcUUGGGGCUUGACCAc -3'
miRNA:   3'- uaCCGGaaCGuGGUCCUGAGCUGGUc -5'
26907 5' -57.6 NC_005809.1 + 15124 0.69 0.322437
Target:  5'- cUGGCauaccaGCGCCAGGGCcugCGGCCGc -3'
miRNA:   3'- uACCGgaa---CGUGGUCCUGa--GCUGGUc -5'
26907 5' -57.6 NC_005809.1 + 26853 0.69 0.322437
Target:  5'- cAUGGCCUcGCGCCAG--UUCGAugcCCAGg -3'
miRNA:   3'- -UACCGGAaCGUGGUCcuGAGCU---GGUC- -5'
26907 5' -57.6 NC_005809.1 + 6287 0.7 0.262898
Target:  5'- uUGGCUgggGCGCCGGGGCUUaucuCCGGu -3'
miRNA:   3'- uACCGGaa-CGUGGUCCUGAGcu--GGUC- -5'
26907 5' -57.6 NC_005809.1 + 1666 0.71 0.230422
Target:  5'- -aGGUCUUGCACCucgcgcuuGGACUCGcggcgaGCCAu -3'
miRNA:   3'- uaCCGGAACGUGGu-------CCUGAGC------UGGUc -5'
26907 5' -57.6 NC_005809.1 + 11267 0.71 0.230422
Target:  5'- uUGcGCUgcgGCGCUGGGacGCUCGGCCAGg -3'
miRNA:   3'- uAC-CGGaa-CGUGGUCC--UGAGCUGGUC- -5'
26907 5' -57.6 NC_005809.1 + 5759 0.73 0.170812
Target:  5'- -gGGCagcgagUGCGCCAGGGCcUUGACCAu -3'
miRNA:   3'- uaCCGga----ACGUGGUCCUG-AGCUGGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.